FC925333

Overview
NameFC925333
Unique NameFC925333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length188
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1982 contig Ccv1_Contig1982:1..188. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925333 vs. ExPASy Swiss-Prot
Match: DRE1D_ARATH (Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.032e-16
Identity = 44/62 (70.97%), Postives = 48/62 (77.42%), Query Frame = 3
Query:    3 DSLLSWSSPESRVGNFSDEDVVLLASSNPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVR 188
            DS LS S   S V + S E    LASS PKKRAGRKKFRETRHP+YRGVR+R+SGKWVCEVR
Sbjct:   10 DSFLSISDHRSPVSD-SSECSPKLASSCPKKRAGRKKFRETRHPIYRGVRQRNSGKWVCEVR 70          
BLAST of FC925333 vs. ExPASy Swiss-Prot
Match: DRE1A_ARATH (Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.486e-14
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 3
Query:   21 SSPESRVGNFSDEDVVLLASSNPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVR 188
            S  ES V +  D  +  LASS PKK AGRKKFRETRHP+YRGVRRR+SGKWVCEVR
Sbjct:   13 SDYESSVSSGGDY-IPTLASSCPKKPAGRKKFRETRHPIYRGVRRRNSGKWVCEVR 67          
BLAST of FC925333 vs. ExPASy Swiss-Prot
Match: DRE1C_ARATH (Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.310e-14
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 3
Query:   18 WSSPESRVGNFSDEDVVLLASSNPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVR 188
            + SP S  G++S +    LA+S PKK AGRKKFRETRHP+YRGVR+R+SGKWVCE+R
Sbjct:   15 YESPVSSGGDYSPK----LATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVCELR 67          
BLAST of FC925333 vs. ExPASy Swiss-Prot
Match: DRE1E_ORYSJ (Dehydration-responsive element-binding protein 1E OS=Oryza sativa subsp. japonica GN=DREB1E PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.065e-12
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 3
Query:   15 SWSSPESRVGNFSDEDVVLLASSNP-KKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVR 188
            S S   S VG   DED  +  SS P K+RAGR KF+ETRHPVY+GVR R+ G+WVCEVR
Sbjct:   11 SSSGTPSPVGGDGDEDSYMTVSSAPPKRRAGRTKFKETRHPVYKGVRSRNPGRWVCEVR 69          
BLAST of FC925333 vs. ExPASy Swiss-Prot
Match: DRE1E_ORYSI (Dehydration-responsive element-binding protein 1E OS=Oryza sativa subsp. indica GN=DREB1E PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.065e-12
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 3
Query:   15 SWSSPESRVGNFSDEDVVLLASSNP-KKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVR 188
            S S   S VG   DED  +  SS P K+RAGR KF+ETRHPVY+GVR R+ G+WVCEVR
Sbjct:   11 SSSGTPSPVGGDGDEDSYMTVSSAPPKRRAGRTKFKETRHPVYKGVRSRNPGRWVCEVR 69          
BLAST of FC925333 vs. ExPASy Swiss-Prot
Match: DRE1F_ARATH (Dehydration-responsive element-binding protein 1F OS=Arabidopsis thaliana GN=DREB1F PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.391e-12
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 3
Query:   54 DEDVVLLASSNPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVR 188
            + D ++LA   PKKRAGR+ F+ETRHPVYRG+RRR+  KWVCEVR
Sbjct:    2 NNDDIILAEMRPKKRAGRRVFKETRHPVYRGIRRRNGDKWVCEVR 46          
BLAST of FC925333 vs. ExPASy Swiss-Prot
Match: DRE1E_ARATH (Dehydration-responsive element-binding protein 1E OS=Arabidopsis thaliana GN=DREB1E PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.816e-12
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 3
Query:   54 DEDVVLLASSNPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVR 188
            + D + +A   PKKRAGR+ F+ETRHP+YRGVRRRD  KWVCEVR
Sbjct:    2 ENDDITVAEMKPKKRAGRRIFKETRHPIYRGVRRRDGDKWVCEVR 46          
BLAST of FC925333 vs. ExPASy Swiss-Prot
Match: DRE1B_ARATH (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.098e-12
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3
Query:   72 LASSNPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVR 188
            LA+S PKK AGRKKFRETRHP+YRGVR+R+SGKWV EVR
Sbjct:   26 LATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVSEVR 64          
BLAST of FC925333 vs. ExPASy Swiss-Prot
Match: DRE1G_ORYSJ (Dehydration-responsive element-binding protein 1G OS=Oryza sativa subsp. japonica GN=DREB1G PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.425e-11
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 3
Query:   24 SPESRVGNFSDEDVVLLASSNPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVR 188
            SP +   +      + ++S+ PK+RAGR KF+ETRHPV++GVRRR+ G+WVCEVR
Sbjct:   17 SPVAADADDGSSAYMTVSSAPPKRRAGRTKFKETRHPVFKGVRRRNPGRWVCEVR 71          
BLAST of FC925333 vs. ExPASy Swiss-Prot
Match: DRE1G_ORYSI (Dehydration-responsive element-binding protein 1G OS=Oryza sativa subsp. indica GN=DREB1G PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.425e-11
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 3
Query:   24 SPESRVGNFSDEDVVLLASSNPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVR 188
            SP +   +      + ++S+ PK+RAGR KF+ETRHPV++GVRRR+ G+WVCEVR
Sbjct:   17 SPVAADADDGSSAYMTVSSAPPKRRAGRTKFKETRHPVFKGVRRRNPGRWVCEVR 71          
The following BLAST results are available for this feature:
BLAST of FC925333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
DRE1D_ARATH6.032e-1670.97Dehydration-responsive element-binding protein 1D ... [more]
DRE1A_ARATH1.486e-1471.43Dehydration-responsive element-binding protein 1A ... [more]
DRE1C_ARATH3.310e-1464.91Dehydration-responsive element-binding protein 1C ... [more]
DRE1E_ORYSJ1.065e-1261.02Dehydration-responsive element-binding protein 1E ... [more]
DRE1E_ORYSI1.065e-1261.02Dehydration-responsive element-binding protein 1E ... [more]
DRE1F_ARATH1.391e-1266.67Dehydration-responsive element-binding protein 1F ... [more]
DRE1E_ARATH1.816e-1266.67Dehydration-responsive element-binding protein 1E ... [more]
DRE1B_ARATH3.098e-1282.05Dehydration-responsive element-binding protein 1B ... [more]
DRE1G_ORYSJ3.425e-1152.73Dehydration-responsive element-binding protein 1G ... [more]
DRE1G_ORYSI3.425e-1152.73Dehydration-responsive element-binding protein 1G ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YG08FM1 TF Citrus clementina cDNA clone KN0AAP3YG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925333 ID=FC925333; Name=FC925333; organism=Citrus clementina; type=EST; length=188bp
TGGATTCTCTCTTAAGCTGGTCATCGCCAGAGTCACGTGTGGGGAATTTT
TCGGACGAGGACGTGGTGTTGTTGGCGTCGAGCAATCCAAAAAAGCGGGC
GGGGAGGAAGAAGTTTCGGGAGACCCGGCATCCGGTGTATCGGGGAGTGA
GGAGGAGGGATTCGGGCAAGTGGGTTTGTGAAGTGAGG
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