FC925337

Overview
NameFC925337
Unique NameFC925337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14624 contig Ccv1_Contig14624:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: MFP_ORYSJ (Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 2.451e-65
Identity = 134/221 (60.63%), Postives = 156/221 (70.59%), Query Frame = 3
Query:   66 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADC-------------------KKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA 671
            A RVTMEVG DGVA++T+ NPPVNAL   I+ GLK+K+ EA  RDDVKAIVLTG GG+F GGFDINVF +VH                       KKP                 MGCHARI+ P+ QLGLPELTLG+IPGFGGTQRLPRLVGL KAIEMML SK IT++EG + GL+DA+ + +EL+K+SRLWAL+IA  RKPWIRSL RTD+LGSLSEA
Sbjct:    4 AIRVTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGGKFCGGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKKPSVAAIQGLALGGGLELTMGCHARISTPEAQLGLPELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGLVDALCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLSEA 224          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: MFPA_CUCSA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.476e-59
Identity = 119/223 (53.36%), Postives = 143/223 (64.13%), Query Frame = 3
Query:   63 AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAD--------------------CKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA 671
            A  R  MEVG DGVAIIT+INPPVN+L+  ++  L+D +E+A  RDDVKAIV+TG  G+FSGGFDI  F  + G                       +KP                 M CHARI+ P  QLGLPEL LG+IPGFGGTQRLPRLVGLSKA+EMML SK I  +E   LGL+DA+V  EEL+  +R WAL+I  RR+PW+ SLHRTDKL SL+EA
Sbjct:    5 AKGRTVMEVGTDGVAIITIINPPVNSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGKFSGGFDITAFGVLQGGKGEQPNVRNISIEMITDIFEAARKPAVAAIDGLALGGGLEVAMACHARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLSKALEMMLTSKPIKGQEAHSLGLVDAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLAEA 227          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: MFPA_BRANA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 4.190e-57
Identity = 120/218 (55.05%), Postives = 143/218 (65.60%), Query Frame = 3
Query:   78 TMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAD--------------------CKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA 671
            T+EVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  G+FSGGFDI+ F ++                         KKP                 M CHARI+AP  QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG  LGLIDAVV   ELL  +R WALDIA RRKPW+ S+ +TDKL  L EA
Sbjct:   10 TIEVGADGVAVITLINPPVNSLSFDVLYSLKSNYEEALSRNDVKAIVVTGAKGKFSGGFDISGFGEIQKGTMKEPKVGYISIDILTDLLEAAKKPSVAAIDGLALGGGLELSMACHARISAPGAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLGEA 227          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: ECHP_DANRE (Peroxisomal bifunctional enzyme OS=Danio rerio GN=ehhadh PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.229e-25
Identity = 68/182 (37.36%), Postives = 99/182 (54.40%), Query Frame = 3
Query:   84 EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ-KVHGADC----------KKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL 596
            E+    VA+ITL NPPVNAL+  +   +    E A S   V A+V+ G  GRF GG DI  F   + G             +KP+                + CH RIA  K +LGLPE+TLG++P  GGTQRLPRL+G+  A+E++   + ++++E  KLG++D  VT +   +V+  +AL
Sbjct:    5 ELVKRSVALITLTNPPVNALSSAVRHAISKTMERALSDPKVTAVVICGENGRFCGGADIREFAGPLRGPPLVPLLDAIEAGEKPVVAAIEGVALGGGFELALVCHYRIAHYKARLGLPEVTLGILPAAGGTQRLPRLIGIPAALELITTGRHVSAQEALKLGMVDQ-VTEQNTCEVALEFAL 185          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: ECHP_PONAB (Peroxisomal bifunctional enzyme OS=Pongo abelii GN=EHHADH PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 62/176 (35.23%), Postives = 100/176 (56.82%), Query Frame = 3
Query:   93 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV--------HGAD----CKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSR 584
            ++ +A+I L NPPVNA++  ++  +K+  ++A     +KAIV+ G  G+FS G DI+ F           H  D     +KP+                +GCH RIA  + Q+GLPE+TLG++PG  GTQ LPRL+G+  A++++   + I ++E  KLG++D VV S+ + +  R
Sbjct:    8 HNALALIRLRNPPVNAISTALLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIHGFSAPRTFGFTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHSEAQVGLPEVTLGLLPGARGTQLLPRLIGVPAALDLITSGRHILADEALKLGILDKVVNSDPVEEAIR 183          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: ECHP_HUMAN (Peroxisomal bifunctional enzyme OS=Homo sapiens GN=EHHADH PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23
Identity = 62/176 (35.23%), Postives = 98/176 (55.68%), Query Frame = 3
Query:   93 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV--------HGAD----CKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSR 584
            ++ +A+I L NPPVNA++  ++  +K+  ++A     +KAIV+ G  G+FS G DI  F           H  D     +KP+                +GCH RIA  + Q+GLPE+TLG++PG  GTQ LPRL G+  A++++   + I ++E  KLG++D VV S+ + +  R
Sbjct:    8 HNALALIRLRNPPVNAISTTLLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIRGFSAPRTFGLTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQVGLPEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVVNSDPVEEAIR 183          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: ECHP_RAT (Peroxisomal bifunctional enzyme OS=Rattus norvegicus GN=Ehhadh PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 62/175 (35.43%), Postives = 99/175 (56.57%), Query Frame = 3
Query:  102 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADC-----------KKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLKVSR 584
            +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F                   +KP+                +GCH RIA  K ++GLPE+TLG++PG  GTQ LPR+VG+  A++++   K ++++E  +LG++DAVV S   EE +K ++
Sbjct:   11 LAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQ 185          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_BACSU (Probable enoyl-CoA hydratase OS=Bacillus subtilis GN=fadB PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 67/197 (34.01%), Postives = 98/197 (49.75%), Query Frame = 3
Query:  102 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADCK------------------KPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-ELLKVSRLWALDIAARRKPWIRSL 635
            VA++T+ NPP NAL+  I+  L    ++  +   V++I++ G G  FS G DI  F  + G +                    KPI                M CH RIAA   +LGLPEL LG+IPGF GTQRLPR VG +KA+E++   + I+ +E   LGL+      E E+++ ++  A   A +    + SL
Sbjct:   12 VAVLTIHNPPANALSSRILEELSSCLDQCETDAGVRSIIIHGEGRFFSAGADIKEFTSLKGNEDSSLLAERGQQLMERIESFPKPIIAAIHGAALGGGLELAMACHIRIAAEDAKLGLPELNLGIIPGFAGTQRLPRYVGTAKALELIGSGEPISGKEALDLGLVSIGAKDEAEVIEKAKALAAKFAEKSPQTLASL 208          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: ECHP_CAVPO (Peroxisomal bifunctional enzyme OS=Cavia porcellus GN=EHHADH PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.715e-22
Identity = 60/178 (33.71%), Postives = 96/178 (53.93%), Query Frame = 3
Query:  102 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADC--------------KKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLKVSR 584
            +A+I L NPPVNA++  ++ G+K+  ++A S   +K IV++G    F  G DI+ F                      +KP+                +GCH RIA  + ++G PE+TLG++PG  GTQ LPRL+G+  A++++   + IT+ E  KLG++D VV S   EE +K ++
Sbjct:   11 LALIRLRNPPVNAISPAVIHGIKEGLQKAMSDYTIKGIVISGANNIFCAGADIHGFSAPLSFGTGSGLGPIVDEMQRYEKPVVAAIQGMALGGGLELSLGCHYRIAHAEARIGFPEVTLGILPGARGTQLLPRLIGVPAALDLITSGRHITAGEALKLGILDKVVNSAPVEEAIKFAQ 188          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: ECHP_MOUSE (Peroxisomal bifunctional enzyme OS=Mus musculus GN=Ehhadh PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22
Identity = 58/174 (33.33%), Postives = 97/174 (55.75%), Query Frame = 3
Query:  102 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADC----------KKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLKVSR 584
            +A+I L NPPVNA++  ++  +++  ++A+    V+AIV+ G    F  G DI+ F+   G             +KP+                +GCH RIA  K ++G PE+ LG++PG  GTQ LPR+VG+  A++++   + I+++E  KLG++D VV S   EE +K ++
Sbjct:   11 LAMIRLCNPPVNAISPTVITEVRNGLQKASLDHTVRAIVICGANDNFCAGADIHGFKSPTGLTLGSLVDEIQRYQKPVVAAIQGVALGGGLELALGCHYRIANAKARVGFPEVMLGILPGARGTQLLPRVVGVPVALDLITSGRHISTDEALKLGILDVVVKSDPVEEAIKFAQ 184          
The following BLAST results are available for this feature:
BLAST of FC925337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MFP_ORYSJ2.451e-6560.63Peroxisomal fatty acid beta-oxidation multifunctio... [more]
MFPA_CUCSA4.476e-5953.36Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
MFPA_BRANA4.190e-5755.05Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
ECHP_DANRE4.229e-2537.36Peroxisomal bifunctional enzyme OS=Danio rerio GN=... [more]
ECHP_PONAB6.106e-2435.23Peroxisomal bifunctional enzyme OS=Pongo abelii GN... [more]
ECHP_HUMAN1.777e-2335.23Peroxisomal bifunctional enzyme OS=Homo sapiens GN... [more]
ECHP_RAT5.169e-2335.43Peroxisomal bifunctional enzyme OS=Rattus norvegic... [more]
FADB_BACSU1.152e-2234.01Probable enoyl-CoA hydratase OS=Bacillus subtilis ... [more]
ECHP_CAVPO5.715e-2233.71Peroxisomal bifunctional enzyme OS=Cavia porcellus... [more]
ECHP_MOUSE9.749e-2233.33Peroxisomal bifunctional enzyme OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH20FM1 TF Citrus clementina cDNA clone KN0AAP8YH20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925337 ID=FC925337; Name=FC925337; organism=Citrus clementina; type=EST; length=672bp
TTCGGATTGATATTAAAATCTCCACTAAAAGAAATAATTGATAATAATAA
CAGTAAGCCATGGCAGCACCGCGAGTGACGATGGAAGTCGGAAACGACGG
CGTTGCGATCATCACTTTGATTAATCCTCCCGTGAACGCCTTAGCTATTC
CAATTGTTGCCGGATTGAAGGACAAGTTTGAGGAGGCCACGAGCCGAGAC
GACGTTAAGGCTATTGTTCTGACTGGCAATGGTGGAAGGTTTTCTGGCGG
TTTCGACATAAATGTTTTTCAGAAGGTTCACGGGGCTGATTGCAAGAAGC
CCATTGTTGCAGCTGTGGAGGGGTTAGCCCTTGGAGGTGGCTTAGAATTG
GCAATGGGATGCCATGCACGTATTGCTGCTCCAAAGACTCAACTTGGCTT
GCCTGAGCTGACACTAGGGGTAATTCCAGGTTTTGGAGGCACACAACGTC
TACCAAGGCTGGTGGGCCTCTCAAAGGCTATTGAAATGATGCTGTTATCT
AAATCAATCACGTCTGAGGAGGGCTGGAAGCTGGGTCTAATTGATGCTGT
TGTGACTTCTGAAGAGTTGCTGAAAGTATCTCGACTCTGGGCTTTAGACA
TTGCAGCAAGGCGCAAACCATGGATACGTTCCCTTCACAGGACAGACAAA
CTTGGTTCTCTTTCTGAAGCAA
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