FC925340

Overview
NameFC925340
Unique NameFC925340
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1408 contig Ccv1_Contig1408:2..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925340 vs. ExPASy Swiss-Prot
Match: ELP3_ARATH (Elongator complex protein 3 OS=Arabidopsis thaliana GN=HAG3 PE=1 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 1.861e-102
Identity = 178/192 (92.71%), Postives = 186/192 (96.88%), Query Frame = 2
Query:    2 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMV 577
            IL+ +PPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHH+IKPE+VELVRRDY ANEGWETFLSYEDTRQDILVGLLRLRKCG+NVTCPELMGKCS+VRELHVYGTAVPVHGR+ADKLQHQGYGTLLMEEAERIA  EHRS K+ VISGVGTRHYYRKLGYELEGPYMV
Sbjct:  370 ILSMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHKIKPEQVELVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGKNVTCPELMGKCSVVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIARREHRSNKIGVISGVGTRHYYRKLGYELEGPYMV 561          
BLAST of FC925340 vs. ExPASy Swiss-Prot
Match: ELP3_ORYSJ (Elongator complex protein 3 OS=Oryza sativa subsp. japonica GN=ELP3 PE=2 SV=2)

HSP 1 Score: 367.851 bits (943), Expect = 2.058e-101
Identity = 175/192 (91.15%), Postives = 188/192 (97.92%), Query Frame = 2
Query:    2 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMV 577
            IL+ +PPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARM+DLGLKCRDVRTREAGIQDIHH+I+P+EVELVRRDY ANEGWETFLSYEDT+QDIL+GLLRLRKCGRNVTCPEL+G+CSIVRELHVYGTAVPVHGR+ADKLQHQGYGTLLMEEAERIA  EHRS+K+AVISGVGTRHYYRKLGYELEGPYMV
Sbjct:  378 ILSMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHKIRPDEVELVRRDYAANEGWETFLSYEDTQQDILIGLLRLRKCGRNVTCPELVGRCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIARKEHRSKKIAVISGVGTRHYYRKLGYELEGPYMV 569          
BLAST of FC925340 vs. ExPASy Swiss-Prot
Match: ELP3_DROME (Probable elongator complex protein 3 OS=Drosophila melanogaster GN=Elp3 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 1.811e-81
Identity = 145/191 (75.92%), Postives = 165/191 (86.39%), Query Frame = 2
Query:    2 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYM 574
            ILA +PPWTRVYRVQRDIPMPLV+SGVE GNLRELALARM DLG  CRDVRTRE GIQ+IH++++P E+EL+RRDYVAN GWETFLSYED  QDILVGLLRLRKC  +   PEL G+CSIVRELHVYG+ VPV+ R+  K QHQG+G LLMEEAERIA  EH S K+AVISGVGTR+YYRK+GY+L+GPYM
Sbjct:  354 ILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGTTCRDVRTREVGIQEIHNKVRPYEIELIRRDYVANGGWETFLSYEDPEQDILVGLLRLRKCSPDTFRPELKGECSIVRELHVYGSVVPVNARDPTKFQHQGFGMLLMEEAERIAREEHGSTKLAVISGVGTRNYYRKMGYQLDGPYM 544          
BLAST of FC925340 vs. ExPASy Swiss-Prot
Match: ELP3_XENTR (Elongator complex protein 3 OS=Xenopus tropicalis GN=elp3 PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 2.366e-81
Identity = 147/192 (76.56%), Postives = 163/192 (84.90%), Query Frame = 2
Query:    2 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMV 577
            ILA +PPWTRVYRVQRDIPMPLV+SGVE GNLRELALARM DLG +CRDVRTRE GIQ+IHH+++P +VEL+RRDYVAN GWETFLSYED  QDIL+GLLRLRKC      PEL G  SIVRELHVYG+ VP+  R+  K QHQG+G LLMEEAERIA  EH S K+AVISGVGTR+YYRKLGYELEGPYMV
Sbjct:  354 ILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGTECRDVRTREVGIQEIHHKVRPYQVELIRRDYVANGGWETFLSYEDPEQDILIGLLRLRKCSEQSFRPELKGGVSIVRELHVYGSVVPISSRDPSKFQHQGFGMLLMEEAERIAREEHGSCKIAVISGVGTRNYYRKLGYELEGPYMV 545          
BLAST of FC925340 vs. ExPASy Swiss-Prot
Match: ELP3_XENLA (Elongator complex protein 3 OS=Xenopus laevis GN=elp3 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 3.089e-81
Identity = 146/192 (76.04%), Postives = 163/192 (84.90%), Query Frame = 2
Query:    2 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMV 577
            ILA +PPWTRVYRVQRDIPMPLV+SGVE GNLRELALARM DLG +CRDVRTRE GIQ+IHH+++P +VEL+RRDYVAN GWETFLSYED  QDIL+GLLRLRKC      PEL G  SIVRELHVYG+ VP+  R+  K QHQG+G LLMEEAERIA  EH S K+AVISGVGTR+YYRK+GYELEGPYMV
Sbjct:  354 ILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGTECRDVRTREVGIQEIHHKVRPYQVELIRRDYVANGGWETFLSYEDPEQDILIGLLRLRKCSEESFRPELKGGVSIVRELHVYGSVVPISSRDPSKFQHQGFGMLLMEEAERIARDEHGSWKIAVISGVGTRNYYRKIGYELEGPYMV 545          
BLAST of FC925340 vs. ExPASy Swiss-Prot
Match: ELP3_DICDI (Probable elongator complex protein 3 OS=Dictyostelium discoideum GN=elp3 PE=3 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 3.089e-81
Identity = 142/191 (74.35%), Postives = 162/191 (84.82%), Query Frame = 2
Query:    2 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYM 574
            +LA +PPWTR+YR+QRDIPMPLVTSGVE GNLREL LARM D G KCRDVRTRE GIQ++HH+IKP++VEL+RRDYVAN GWETFLS+ED +QDIL+GLLRLRKC      PEL   CSIVRELHVYG+ V +H R+  K QHQGYGTLLMEEAERIA  EH S K+AVI+GVGTRHYYRKLGYEL+G Y+
Sbjct:  364 VLALVPPWTRIYRIQRDIPMPLVTSGVEYGNLRELCLARMKDFGTKCRDVRTREVGIQEVHHKIKPDQVELIRRDYVANGGWETFLSFEDPKQDILIGLLRLRKCSETSFRPELKENCSIVRELHVYGSVVGIHNRDPTKFQHQGYGTLLMEEAERIAREEHGSIKLAVIAGVGTRHYYRKLGYELDGVYV 554          
BLAST of FC925340 vs. ExPASy Swiss-Prot
Match: ELP3_CHICK (Elongator complex protein 3 OS=Gallus gallus GN=ELP3 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 3.089e-81
Identity = 147/192 (76.56%), Postives = 163/192 (84.90%), Query Frame = 2
Query:    2 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMV 577
            ILA +PPWTRVYRVQRDIPMPLV+SGVE GNLRELALARM DLG +CRDVRTRE GIQ+IHH+++P ++EL+RRDYVAN GWETFLSYED  QDILVGLLRLRKC      PEL G  SIVRELHVYG+ VPV  R+  K QHQG+G LLMEEAERIA  EH S K+AVISGVGTR+YYRK+GYELEGPYMV
Sbjct:  351 ILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGTQCRDVRTREVGIQEIHHKVRPYQIELIRRDYVANGGWETFLSYEDPEQDILVGLLRLRKCSEESFRPELKGGVSIVRELHVYGSVVPVSSRDPSKFQHQGFGMLLMEEAERIAKEEHGSWKIAVISGVGTRNYYRKIGYELEGPYMV 542          
BLAST of FC925340 vs. ExPASy Swiss-Prot
Match: ELP3_DANRE (Elongator complex protein 3 OS=Danio rerio GN=elp3 PE=2 SV=3)

HSP 1 Score: 298.901 bits (764), Expect = 1.174e-80
Identity = 144/192 (75.00%), Postives = 163/192 (84.90%), Query Frame = 2
Query:    2 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMV 577
            ILA +PPWTRVYRVQRDIPMPLV+SGVE GNLRELALARM D+G +CRDVRTRE GIQ+IHH+++P +VEL+RRDYVAN GWETFLSYED  QDIL+GLLRLR+C      PEL G  SIVRELHVYG+ VPV  R+  K QHQG+G +LMEEAERIA  EH S K+AVISGVGTR+YYRK+GYELEGPYMV
Sbjct:  353 ILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDMGTECRDVRTREVGIQEIHHKVRPYQVELIRRDYVANGGWETFLSYEDPEQDILIGLLRLRRCSPQSFRPELKGGVSIVRELHVYGSVVPVSSRDPSKFQHQGFGMMLMEEAERIARDEHGSSKLAVISGVGTRNYYRKMGYELEGPYMV 544          
BLAST of FC925340 vs. ExPASy Swiss-Prot
Match: ELP3_MOUSE (Elongator complex protein 3 OS=Mus musculus GN=Elp3 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 2.892e-79
Identity = 145/192 (75.52%), Postives = 161/192 (83.85%), Query Frame = 2
Query:    2 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMV 577
            ILA +PPWTRVYRVQRDIPMPLV+SGVE GNLRELA ARM DLG++CRDVRTRE GIQ+IHH+++P +VELVRRDYVAN GWETFLSYED  QDIL+GLLRLRKC       EL G  SIVRELHVYG+ VPV  R+  K QHQG+G LLMEEAERIA  EH S KMAVISGVGTR+YYRK+GY L+GPYMV
Sbjct:  352 ILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELAFARMKDLGIQCRDVRTREVGIQEIHHRVRPYQVELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKMAVISGVGTRNYYRKIGYRLQGPYMV 543          
BLAST of FC925340 vs. ExPASy Swiss-Prot
Match: ELP3_HUMAN (Elongator complex protein 3 OS=Homo sapiens GN=ELP3 PE=1 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 2.892e-79
Identity = 145/192 (75.52%), Postives = 162/192 (84.38%), Query Frame = 2
Query:    2 ILAPLPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYVANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGREADKLQHQGYGTLLMEEAERIALGEHRSRKMAVISGVGTRHYYRKLGYELEGPYMV 577
            ILA +PPWTRVYRVQRDIPMPLV+SGVE GNLRELALARM DLG++CRDVRTRE GIQ+IHH+++P +VELVRRDYVAN GWETFLSYED  QDIL+GLLRLRKC       EL G  SIVRELHVYG+ VPV  R+  K QHQG+G LLMEEAERIA  EH S K+AVISGVGTR+YYRK+GY L+GPYMV
Sbjct:  352 ILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPDQDILIGLLRLRKCSEETFRFELGGGVSIVRELHVYGSVVPVSSRDPTKFQHQGFGMLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKIGYRLQGPYMV 543          
The following BLAST results are available for this feature:
BLAST of FC925340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ELP3_ARATH1.861e-10292.71Elongator complex protein 3 OS=Arabidopsis thalian... [more]
ELP3_ORYSJ2.058e-10191.15Elongator complex protein 3 OS=Oryza sativa subsp.... [more]
ELP3_DROME1.811e-8175.92Probable elongator complex protein 3 OS=Drosophila... [more]
ELP3_XENTR2.366e-8176.56Elongator complex protein 3 OS=Xenopus tropicalis ... [more]
ELP3_XENLA3.089e-8176.04Elongator complex protein 3 OS=Xenopus laevis GN=e... [more]
ELP3_DICDI3.089e-8174.35Probable elongator complex protein 3 OS=Dictyostel... [more]
ELP3_CHICK3.089e-8176.56Elongator complex protein 3 OS=Gallus gallus GN=EL... [more]
ELP3_DANRE1.174e-8075.00Elongator complex protein 3 OS=Danio rerio GN=elp3... [more]
ELP3_MOUSE2.892e-7975.52Elongator complex protein 3 OS=Mus musculus GN=Elp... [more]
ELP3_HUMAN2.892e-7975.52Elongator complex protein 3 OS=Homo sapiens GN=ELP... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YC20FM1 TF Citrus clementina cDNA clone KN0AAP11YC20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925340 ID=FC925340; Name=FC925340; organism=Citrus clementina; type=EST; length=578bp
GATTCTAGCCCCTTTACCCCCTTGGACTCGTGTTTATAGAGTTCAGCGTG
ATATTCCCATGCCTTTGGTTACTTCCGGGGTTGAGAAAGGGAACCTTCGG
GAGCTAGCTTTAGCTCGGATGGATGACTTGGGCTTGAAATGCCGTGATGT
TCGGACACGCGAAGCTGGAATTCAGGACATCCATCATCAAATAAAGCCAG
AAGAAGTAGAGCTTGTCCGTCGTGATTATGTGGCAAATGAAGGTTGGGAA
ACATTTCTTTCGTACGAAGACACACGCCAGGATATTCTTGTTGGCTTGTT
GCGCTTGAGGAAGTGTGGGCGGAATGTTACTTGTCCAGAGCTCATGGGCA
AGTGTTCTATTGTTCGTGAACTCCATGTGTATGGAACCGCTGTTCCTGTG
CACGGTCGGGAAGCTGACAAGCTGCAACACCAGGGTTACGGTACACTCTT
AATGGAAGAGGCAGAGCGGATTGCACTTGGAGAGCACAGATCAAGAAAGA
TGGCCGTCATTTCAGGTGTAGGAACTCGACATTACTATAGAAAATTGGGA
TACGAACTTGAAGGTCCTTACATGGTGA
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