FC925344

Overview
NameFC925344
Unique NameFC925344
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10414 contig Ccv1_Contig10414:795..1256. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.912e-20
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 3
Query:   45 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP 209
            KETQEM+D A KHNI ADIE+I ADYVNTAMERLAKADV+YRFVIDVANTMK TP
Sbjct:  303 KETQEMVDLAGKHNITADIELISADYVNTAMERLAKADVKYRFVIDVANTMKPTP 357          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.138e-19
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 3
Query:   45 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 203
            KETQEM+DFAAKHNI AD+EVIP DYVNTAMERL K+DVRYRFVID+ANTM++
Sbjct:  307 KETQEMLDFAAKHNITADVEVIPMDYVNTAMERLVKSDVRYRFVIDIANTMRT 359          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.535e-19
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 3
Query:   45 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 203
            KETQEM+DFAA+HNI AD+EVIP DYVNTAMERL K+DVRYRFVIDVANT+K+
Sbjct:  284 KETQEMLDFAAQHNITADVEVIPVDYVNTAMERLVKSDVRYRFVIDVANTIKT 336          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.311e-19
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 3
Query:   45 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 203
            KETQEMIDFAAKH+I++DIEV+P DYVNTAMERL K DVRYRFVIDVANT+K+
Sbjct:  308 KETQEMIDFAAKHDIKSDIEVVPMDYVNTAMERLLKGDVRYRFVIDVANTLKA 360          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.325e-19
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 3
Query:   45 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 200
            KETQEMIDFAA+HNI ADIEVIP DY+NTAMERL KADVRYRFVID+ NT+K
Sbjct:  305 KETQEMIDFAARHNITADIEVIPIDYLNTAMERLVKADVRYRFVIDIGNTLK 356          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.325e-19
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 3
Query:   45 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP 209
            KETQEMID A KHNI ADIE+I ADYVNTAMERL KADVRYRFVIDVANT+K  P
Sbjct:  303 KETQEMIDMAGKHNITADIELISADYVNTAMERLEKADVRYRFVIDVANTLKPNP 357          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.782e-18
Identity = 41/54 (75.93%), Postives = 49/54 (90.74%), Query Frame = 3
Query:   45 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKST 206
            KETQEMIDF+ KHN++ +IEV+P DYVN AM+RLAKADV+YRFVIDVANT+K T
Sbjct:  309 KETQEMIDFSPKHNVKPEIEVVPMDYVNIAMQRLAKADVKYRFVIDVANTLKPT 362          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.018e-17
Identity = 39/54 (72.22%), Postives = 49/54 (90.74%), Query Frame = 3
Query:   45 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKST 206
            +ETQEMIDFAA+H I+A+IE+I  DYVNTAM+RLAK DVRYRFVID++NT+ +T
Sbjct:  308 QETQEMIDFAAEHGIKAEIEIISMDYVNTAMDRLAKGDVRYRFVIDISNTLAAT 361          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.624e-16
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 3
Query:   45 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 197
            KETQEM+DF AKHNI ADIE+I  D +NTAMERLAK+DVRYRFVIDVAN++
Sbjct:  307 KETQEMLDFCAKHNITADIELIKMDEINTAMERLAKSDVRYRFVIDVANSL 357          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.427e-16
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 3
Query:   45 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 200
            KETQEMIDFAAK+NI AD+EVIP DY+NTAM+RL K+DV+YRFVIDV  ++K
Sbjct:  307 KETQEMIDFAAKNNIVADVEVIPIDYINTAMDRLLKSDVKYRFVIDVEKSLK 358          
The following BLAST results are available for this feature:
BLAST of FC925344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CADH7_ARATH3.912e-2085.45Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
MTDH_APIGR1.138e-1983.02Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
MTDH_PETCR2.535e-1983.02Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]
MTDH_MESCR3.311e-1983.02Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
MTDH_FRAAN4.325e-1984.62Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
CADH8_ARATH4.325e-1983.64Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
MTDH3_STYHU4.782e-1875.93Probable mannitol dehydrogenase 3 OS=Stylosanthes ... [more]
CADH6_ARATH9.018e-1772.22Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
CADH9_ARATH2.624e-1678.43Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
GEDH1_OCIBA3.427e-1675.00Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YC22FM1 TF Citrus clementina cDNA clone KN0AAP11YC22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925344 ID=FC925344; Name=FC925344; organism=Citrus clementina; type=EST; length=463bp
TTTCAGGGAGCCTTTTAGTTGGTGGCAGTCTCATTGGGGGGTTGAAGGAG
ACTCAAGAGATGATTGATTTTGCAGCAAAACACAACATCAGAGCTGATAT
TGAGGTCATACCGGCCGACTATGTGAACACAGCCATGGAGCGCCTTGCTA
AAGCCGATGTTAGATATCGCTTTGTCATCGACGTTGCAAACACAATGAAG
TCCACTCCTTAAATTTTCTCCCTTTTGAGTTGCGCTTAAAACGAGGAATG
TGCGTTTATTGTTGAGTCACAACATCGTCTAAGTTTTAGATTATGTTAGT
CTTTTGTTGTGATTTCAAAACTGTTTTTACTTTTTAAGAATAATAATTTC
GTGACATATATTCCATCTGTGTGACAAATTTATGTAATAGCGAGCTATAT
GTTAGTTTTTACTGAAATTAATTATTCAGGTTTTGATTTAACCTTAAAAA
AAAAAAAAAAAAA
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