FC925347

Overview
NameFC925347
Unique NameFC925347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14625 contig Ccv1_Contig14625:1..468. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925347 vs. ExPASy Swiss-Prot
Match: TPC6B_MOUSE (Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.167e-20
Identity = 41/72 (56.94%), Postives = 59/72 (81.94%), Query Frame = 1
Query:  154 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRIS 369
            ++E++G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L ++S
Sbjct:   35 KLESMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLS 106          
BLAST of FC925347 vs. ExPASy Swiss-Prot
Match: TPC6B_HUMAN (Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.442e-20
Identity = 41/72 (56.94%), Postives = 59/72 (81.94%), Query Frame = 1
Query:  154 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRIS 369
            ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L+++S
Sbjct:   35 KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMS 106          
BLAST of FC925347 vs. ExPASy Swiss-Prot
Match: TPC6B_BOVIN (Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.442e-20
Identity = 41/72 (56.94%), Postives = 59/72 (81.94%), Query Frame = 1
Query:  154 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRIS 369
            ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L+++S
Sbjct:   35 KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMS 106          
BLAST of FC925347 vs. ExPASy Swiss-Prot
Match: TPC6A_MOUSE (Trafficking protein particle complex subunit 6A OS=Mus musculus GN=Trappc6a PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.140e-16
Identity = 34/74 (45.95%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  157 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDP 378
            +E +G++VG  L ER  +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+GT+VLQDN F  L  + + P
Sbjct:   37 LEGLGFRVGQALGERLPLETPAFREELDALKFLCRDLWAAMFQKHMDGLRTNHQGTYVLQDNSFPLLVTMGSGP 110          
BLAST of FC925347 vs. ExPASy Swiss-Prot
Match: YA95_SCHPO (Uncharacterized protein C13G6.05c OS=Schizosaccharomyces pombe GN=SPAC13G6.05c PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 6.226e-16
Identity = 44/144 (30.56%), Postives = 76/144 (52.78%), Query Frame = 1
Query:   61 VSESCVDSLLTEIVSTYNNRFYANKPELAARR--------IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCG 468
            V+ + +D LL E+V T        K + ++ +        +E+IG+QVG +++ER  + R R ++  + ++F+C++ W  +F+K +DNLKTN RG FVL D  F W ++++     E              A + T + YFP G
Sbjct:    3 VNVASLDFLLIELVHTAKRLAEDRKKKSSSEKSIESDFQMLESIGFQVGRKITERLLLNRNRITETTDVMRFLCRELWPIVFRKPLDNLKTNRRGIFVLTDTYFYWFTKMTAMTGTE-------------MAQITTPYFYFPSG 133          
BLAST of FC925347 vs. ExPASy Swiss-Prot
Match: TPC6A_BOVIN (Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.174e-14
Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  157 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRIST 372
            +E +G++VG  L ER   E   F + L+ +KF+CKD W  +F KQ+D+L+TNH+GT+VLQDN F  L R+++
Sbjct:   37 LEGMGFRVGQALGERLPRETLTFREELDILKFLCKDLWVAVFHKQMDSLRTNHQGTYVLQDNSFPLLVRMAS 108          
BLAST of FC925347 vs. ExPASy Swiss-Prot
Match: TPC6A_HUMAN (Trafficking protein particle complex subunit 6A OS=Homo sapiens GN=TRAPPC6A PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  157 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF 348
            +E +G++VG  L ER   E   F + L+ +KF+CKD W  +F+KQ+D+L+TNH+GT+VLQDN F
Sbjct:   37 LEGMGFRVGQALGERLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSF 100          
BLAST of FC925347 vs. ExPASy Swiss-Prot
Match: TRS33_YEAST (Transport protein particle 33 kDa subunit OS=Saccharomyces cerevisiae GN=TRS33 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.448e-12
Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  139 ELAARRIEAIGYQVGHQLSERYTMERP-----RFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTE 396
            E    R+  IG+Q+G +LSE            +  D L  +KFIC+D W ++F KQIDNLKTNHRGTF L D  +R +   S +   +N E
Sbjct:  117 EKVLARLRNIGFQIGLKLSELLIFSNNPNLKFKEMDLLLIMKFICRDVWKQIFGKQIDNLKTNHRGTFYLLDYDYRPIQSFSLEEDAKNEE 207          
The following BLAST results are available for this feature:
BLAST of FC925347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TPC6B_MOUSE4.167e-2056.94Trafficking protein particle complex subunit 6B OS... [more]
TPC6B_HUMAN5.442e-2056.94Trafficking protein particle complex subunit 6B OS... [more]
TPC6B_BOVIN5.442e-2056.94Trafficking protein particle complex subunit 6B OS... [more]
TPC6A_MOUSE2.140e-1645.95Trafficking protein particle complex subunit 6A OS... [more]
YA95_SCHPO6.226e-1630.56Uncharacterized protein C13G6.05c OS=Schizosacchar... [more]
TPC6A_BOVIN1.174e-1447.22Trafficking protein particle complex subunit 6A OS... [more]
TPC6A_HUMAN2.616e-1450.00Trafficking protein particle complex subunit 6A OS... [more]
TRS33_YEAST2.448e-1241.76Transport protein particle 33 kDa subunit OS=Sacch... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YG14FM1 TF Citrus clementina cDNA clone KN0AAP3YG14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925347 ID=FC925347; Name=FC925347; organism=Citrus clementina; type=EST; length=468bp
TTAATTCTTTTCTTTTTAAACGAATCAGAGAAACAGCAACAGTGAAAAAT
GGGGAGGGAAGTATCAGAGAGTTGCGTTGACAGCTTGTTAACAGAAATAG
TATCCACGTATAACAATCGTTTCTACGCCAACAAGCCAGAGCTTGCAGCC
CGTCGGATCGAGGCGATTGGTTATCAGGTCGGTCACCAGCTCTCCGAACG
GTATACAATGGAGAGGCCACGCTTTAGTGATCATCTAGAGGCGATAAAGT
TCATCTGCAAGGACTTTTGGTCTGAGCTCTTCAAGAAGCAGATAGACAAC
TTGAAGACGAACCATAGAGGTACCTTTGTATTGCAAGACAATCGGTTTCG
ATGGCTTTCACGTATCTCGACTGATCCATCAGTCGAAAATACTGAATCTC
AAGATCCTTCTGCTGCAGCTGAAAGCAAGGCATCCCTAGCAACCATGCAC
GTGTACTTCCCCTGTGGA
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