FC925347
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC925347 vs. ExPASy Swiss-Prot
Match: TPC6B_MOUSE (Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.167e-20 Identity = 41/72 (56.94%), Postives = 59/72 (81.94%), Query Frame = 1 Query: 154 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRIS 369 ++E++G++VG L ER+T + RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L ++S Sbjct: 35 KLESMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLS 106
BLAST of FC925347 vs. ExPASy Swiss-Prot
Match: TPC6B_HUMAN (Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 5.442e-20 Identity = 41/72 (56.94%), Postives = 59/72 (81.94%), Query Frame = 1 Query: 154 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRIS 369 ++E +G++VG L ER+T + RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L+++S Sbjct: 35 KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMS 106
BLAST of FC925347 vs. ExPASy Swiss-Prot
Match: TPC6B_BOVIN (Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 5.442e-20 Identity = 41/72 (56.94%), Postives = 59/72 (81.94%), Query Frame = 1 Query: 154 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRIS 369 ++E +G++VG L ER+T + RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L+++S Sbjct: 35 KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMS 106
BLAST of FC925347 vs. ExPASy Swiss-Prot
Match: TPC6A_MOUSE (Trafficking protein particle complex subunit 6A OS=Mus musculus GN=Trappc6a PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.140e-16 Identity = 34/74 (45.95%), Postives = 53/74 (71.62%), Query Frame = 1 Query: 157 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDP 378 +E +G++VG L ER +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+GT+VLQDN F L + + P Sbjct: 37 LEGLGFRVGQALGERLPLETPAFREELDALKFLCRDLWAAMFQKHMDGLRTNHQGTYVLQDNSFPLLVTMGSGP 110
BLAST of FC925347 vs. ExPASy Swiss-Prot
Match: YA95_SCHPO (Uncharacterized protein C13G6.05c OS=Schizosaccharomyces pombe GN=SPAC13G6.05c PE=1 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 6.226e-16 Identity = 44/144 (30.56%), Postives = 76/144 (52.78%), Query Frame = 1 Query: 61 VSESCVDSLLTEIVSTYNNRFYANKPELAARR--------IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCG 468 V+ + +D LL E+V T K + ++ + +E+IG+QVG +++ER + R R ++ + ++F+C++ W +F+K +DNLKTN RG FVL D F W ++++ E A + T + YFP G Sbjct: 3 VNVASLDFLLIELVHTAKRLAEDRKKKSSSEKSIESDFQMLESIGFQVGRKITERLLLNRNRITETTDVMRFLCRELWPIVFRKPLDNLKTNRRGIFVLTDTYFYWFTKMTAMTGTE-------------MAQITTPYFYFPSG 133
BLAST of FC925347 vs. ExPASy Swiss-Prot
Match: TPC6A_BOVIN (Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.174e-14 Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 157 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRIST 372 +E +G++VG L ER E F + L+ +KF+CKD W +F KQ+D+L+TNH+GT+VLQDN F L R+++ Sbjct: 37 LEGMGFRVGQALGERLPRETLTFREELDILKFLCKDLWVAVFHKQMDSLRTNHQGTYVLQDNSFPLLVRMAS 108
BLAST of FC925347 vs. ExPASy Swiss-Prot
Match: TPC6A_HUMAN (Trafficking protein particle complex subunit 6A OS=Homo sapiens GN=TRAPPC6A PE=1 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14 Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 1 Query: 157 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF 348 +E +G++VG L ER E F + L+ +KF+CKD W +F+KQ+D+L+TNH+GT+VLQDN F Sbjct: 37 LEGMGFRVGQALGERLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSF 100
BLAST of FC925347 vs. ExPASy Swiss-Prot
Match: TRS33_YEAST (Transport protein particle 33 kDa subunit OS=Saccharomyces cerevisiae GN=TRS33 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.448e-12 Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = 1 Query: 139 ELAARRIEAIGYQVGHQLSERYTMERP-----RFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTE 396 E R+ IG+Q+G +LSE + D L +KFIC+D W ++F KQIDNLKTNHRGTF L D +R + S + +N E Sbjct: 117 EKVLARLRNIGFQIGLKLSELLIFSNNPNLKFKEMDLLLIMKFICRDVWKQIFGKQIDNLKTNHRGTFYLLDYDYRPIQSFSLEEDAKNEE 207 The following BLAST results are available for this feature:
BLAST of FC925347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC925347 ID=FC925347; Name=FC925347; organism=Citrus clementina; type=EST; length=468bpback to top |