FC925348

Overview
NameFC925348
Unique NameFC925348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1409 contig Ccv1_Contig1409:3..645. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925348 vs. ExPASy Swiss-Prot
Match: DRP2B_ARATH (Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 2.350e-78
Identity = 158/216 (73.15%), Postives = 175/216 (81.02%), Query Frame = 2
Query:    2 IPAMGGPVRVAESGHTMRQSLSDGSLDTMARRPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYISVSAQSTARIEELLQEDQNVKHRRDRYQKQSELLSKLTRQLSIHDNRAAAASNWSDGGGGAESSPRTS-AASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRSGSNSGSRR-TPNPVPP 643
            I A GG V  A    +MRQSLS+GSLD M R+P DPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEK+KEDMLNQLY S+SA    RIE L+QEDQNVK RRDRYQKQS LLSKLTRQLSIHDNRAAAAS+WSD   G ESSPRT+  +SG+DW +AF+AAA+GP SL+ Y    S GHSRRYSDPA+NG+  SGS   SRR TPN +PP
Sbjct:  702 IQARGGQVGSA----SMRQSLSEGSLDKMVRKPVDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKSKEDMLNQLYSSISAIGNERIESLIQEDQNVKRRRDRYQKQSSLLSKLTRQLSIHDNRAAAASSWSD-NSGTESSPRTNGGSSGEDWMNAFNAAASGPDSLKRY---GSGGHSRRYSDPAQNGEDSSGSGGSSRRTTPNRLPP 909          
BLAST of FC925348 vs. ExPASy Swiss-Prot
Match: DRP2A_ARATH (Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2)

HSP 1 Score: 285.034 bits (728), Expect = 2.200e-76
Identity = 156/216 (72.22%), Postives = 171/216 (79.17%), Query Frame = 2
Query:    2 IPAMGGPVRVAESGHTMRQSLSDGSLDTMARRPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYISVSAQSTARIEELLQEDQNVKHRRDRYQKQSELLSKLTRQLSIHDNRAAAASNWSDGGGGAESSPRTS-AASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRS-GSNSGSRRTPNPVPP 643
            I A GG V       +MRQSLS+GSLD M R+P DPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLY S+SA    RIE L+QEDQNVK RR+RYQKQS LLSKLTRQLSIHDNRAAAAS++SD   G ESSPR S  +SGDDW +AF++AANGP    S S+  S GHSRRYSDPA+NGD  S GS S  R TPN +PP
Sbjct:  695 IQARGGQV----GSVSMRQSLSEGSLDKMVRKPIDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAIGNERIESLIQEDQNVKRRRERYQKQSSLLSKLTRQLSIHDNRAAAASSYSD-NSGTESSPRASGGSSGDDWMNAFNSAANGPSD--SLSKYGSGGHSRRYSDPAQNGDAASPGSGSNRRTTPNRLPP 903          
The following BLAST results are available for this feature:
BLAST of FC925348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DRP2B_ARATH2.350e-7873.15Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 S... [more]
DRP2A_ARATH2.200e-7672.22Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YC24FM1 TF Citrus clementina cDNA clone KN0AAP11YC24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925348 ID=FC925348; Name=FC925348; organism=Citrus clementina; type=EST; length=643bp
TATTCCAGCCATGGGAGGACCTGTTAGAGTTGCTGAAAGTGGTCATACGA
TGCGTCAGAGTCTTTCTGATGGTTCTCTTGATACCATGGCTCGAAGACCT
GCTGACCCTGAGGAAGAACTTCGATGGATGTCTCAAGAAGTACGTGGTTA
CGTTGAAGCAGTTTTGAATAGTTTAGCTGCTAATGTGCCCAAAGCAGTTG
TACTTTGCCAAGTCGAGAAAGCGAAGGAAGACATGTTGAATCAGTTATAT
ATCTCCGTCAGTGCACAAAGCACGGCAAGGATTGAAGAGCTGCTTCAGGA
GGACCAGAATGTGAAGCATAGGAGGGATCGCTATCAGAAACAGTCTGAAC
TCCTGTCTAAACTAACCCGCCAACTTAGCATTCATGACAACCGAGCGGCT
GCTGCCTCTAACTGGTCGGACGGTGGTGGTGGAGCAGAAAGCAGCCCTAG
AACAAGTGCCGCATCAGGTGATGACTGGAGATCCGCTTTTGATGCTGCTG
CCAATGGACCTGTAAGCCTTCGCAGCTACTCTCGGTCTGCATCCAATGGT
CACAGCCGGCGTTACAGTGATCCAGCCGAGAATGGTGATGTGAGATCTGG
TTCAAACTCGGGCAGTCGTCGTACTCCTAATCCGGTGCCGCCG
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