FC925358

Overview
NameFC925358
Unique NameFC925358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6317 contig Ccv1_Contig6317:273..1004. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925358 vs. ExPASy Swiss-Prot
Match: KHA1_SCHPO (K(+)/H(+) antiporter 1 OS=Schizosaccharomyces pombe GN=kha1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.909e-39
Identity = 91/222 (40.99%), Postives = 127/222 (57.21%), Query Frame = -1
Query:   10 YGPFLVFMGVALSITAFPVLARILAELKLLTTRVGETAMSAAAFNDXXXXXXXXXXXXXAGDGTASSGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVMLKIP 675
            +G FL+F+  A+SITAFPVLARIL+EL LL  RVG   +SA   ND                G        S V A+++LL  L + +F+   I+P +  +A +     D   E++IC+ L+ V+VS F TD+IGIH IFG F+ G  IP   +   ++ E+IED V+ L LPLYFASSGLKT+++T+   K WG     I  A A K+  +   A +LK+P
Sbjct:  156 FGKFLLFISTAMSITAFPVLARILSELHLLHKRVGVIVLSAGIGNDVIGWILLALSVTLVNSG--------SGVRAVYILLLALGWCLFLFIAIKPLVYLLAVKTRSLKDKPSESFICIVLSMVLVSAFFTDIIGIHPIFGGFLVGTIIPHENDLTVKITEKIEDLVNCLFLPLYFASSGLKTNISTLNTGKIWGYTIGTICVAIASKMGSSMLAARILKMP 369          
BLAST of FC925358 vs. ExPASy Swiss-Prot
Match: KHA1_YEAST (K(+)/H(+) antiporter 1 OS=Saccharomyces cerevisiae GN=KHA1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.203e-28
Identity = 71/236 (30.08%), Postives = 119/236 (50.42%), Query Frame = -1
Query:    1 NTIDGLDQVGYGPFLVFMGVALSITAFPVLARILAELKLLTTRVGETAMSAAAFNDXXXXXXXXXXXXXAGDGTASSGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSPEHDVVDEAYICLTLAGVM-VSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGLLALVITTACAGKILGTFAVAVMLKIPARE 705
            N  +G   + +  F+VF+ V++S+TAFPVL RIL EL+L+  R G   ++A   ND                    S  + SPV  +++LL   A+ +     ++  +RWV  R              + +  +M +S + TD+IG+H IFGAF+ GL +P+  ++  +L ER+ED  + + +P+YFA +GL  D+  + + + WG +   I  A   KI+     A +  +  RE
Sbjct:  145 NKTEGERHIKFSVFMVFIAVSISVTAFPVLCRILNELRLIKDRAGIVVLAAGIINDIMGWILLALSIIL-------SSAEGSPVNTVYILLITFAWFLIYFFPLKYLLRWVLIRTHELDRSKPSPLATMCILFIMFISAYFTDIIGVHPIFGAFIAGLVVPRDDHYVVKLTERMEDIPNIVFIPIYFAVAGLNVDLTLLNEGRDWGYVFATIGIAIFTKIISGTLTAKLTGLFWRE 373          
BLAST of FC925358 vs. ExPASy Swiss-Prot
Match: CHX13_ARATH (K(+)/H(+) antiporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.040e-14
Identity = 60/208 (28.85%), Postives = 96/208 (46.15%), Query Frame = -1
Query:   28 SITAFPVLARILAELKLLTTRVGETAMSAAAFNDXXXXXXXXXXXXXAGDGTASSGEKKSPVIAIWVLLSGLAFVIFMLTVIRPAMRWVARRCSPEHDVVDEAYICLTLAGVMVSGFMTDLIGIHSIFGAFVFGLTIPKGGNFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRDAKSWGL----LALVITTACAGKILGTFAVA 639
            S+T+FPV   +LAEL +L + +G  A   +   +               D T +S    S +I       GL  VI+   V RP + W+ +R +   D  D       L  + ++    + +G+H+ FGAF  G+++P G      L  ++E F S L LP + A SGL+T+   I ++    +    + L+IT  C  K LGT A +
Sbjct:  190 SMTSFPVTTTVLAELNILNSELGRLATHCSMVCEVCSWFVALAFNLYTRDRTMTSLYALSMII-------GLLLVIYF--VFRPIIVWLTQRKTKSMDKKDVVPFFPVLLLLSIASLSGEAMGVHAAFGAFWLGVSLPDGPPLGTELAAKLEMFASNLFLPCFIAISGLQTNFFEITESHEHHVVMIEIILLITYGC--KFLGTAAAS 386          
The following BLAST results are available for this feature:
BLAST of FC925358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
KHA1_SCHPO7.909e-3940.99K(+)/H(+) antiporter 1 OS=Schizosaccharomyces pomb... [more]
KHA1_YEAST8.203e-2830.08K(+)/H(+) antiporter 1 OS=Saccharomyces cerevisiae... [more]
CHX13_ARATH1.040e-1428.85K(+)/H(+) antiporter 13 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YI02FM1 TF Citrus clementina cDNA clone KN0AAP8YI02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925358 ID=FC925358; Name=FC925358; organism=Citrus clementina; type=EST; length=732bp
CTCTCTCGCCGGTATCTTAAGCATCACGGCCACAGCAAATGTTCCAAGAA
TCTTGCCCGCACATGCTGTTGTTATCACAAGCGCCAACAGCCCCCACGAC
TTTGCGTCGCGTATGGTGGCCACGTCAGTCTTTAATCCACTCGACGCAAA
GTAAAGCGGAAGCAGCAAGCCCGACACGAAATCTTCAATCCTCTCAATCA
ATCTCTCCGCAAAATTTCCTCCTTTCGGAATCGTTAGTCCGAAAACGAAT
GCCCCAAATATAGAATGGATTCCTATTAGGTCAGTCATGAATCCGGATAC
CATGACGCCAGCTAACGTTAAGCAAATGTAAGCTTCATCTACGACGTCGT
GTTCAGGAGAGCAGCGGCGGGCGACCCATCTCATGGCCGGCCGGATGACT
GTCAACATGAAGATAACAAAAGCGAGGCCGGAGAGGAGTACCCATATGGC
TATAACTGGGCTCTTCTTTTCTCCGCTGGAAGCGGTGCCGTCTCCGGCTA
TGGCAACGGCTAGGGCTAGGAGGATCCACGCTGCGACATCGTTGAATGCT
GCGGCGGACATGGCGGTTTCGCCTACTCGAGTTGTGAGGAGCTTGAGCTC
TGCTAATATACGGGCGAGGACAGGAAAGGCTGTGATGGAGAGAGCGACGC
CCATGAAGACCAAGAATGGGCCGTAGCCAACTTGGTCAAGGCCGTCAATG
GTGTTTCTGAGGACGAACGCGACGCCGATGCC
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