FC925360

Overview
NameFC925360
Unique NameFC925360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length242
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3797 contig Ccv1_Contig3797:1..242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925360 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.648e-24
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 2
Query:    2 LAEPP*KLPNVLFLKVDVDELKSVATDWALEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHPATAS 205
            LAE   KLPNV FLKVDVDELK+VA +WA+E+MPTFMFLKEGKI+DKVVGAKK+ELQQTIAKH ATAS
Sbjct:   50 LAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117          
BLAST of FC925360 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.705e-24
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 2
Query:    5 AEPP*KLPNVLFLKVDVDELKSVATDWALEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHPATAS 205
            AE   K+P V FLKVDVDELKSVATDWA+EAMPTFMFLKEGKIVDKVVGAKK+ELQQTIAKH ++ S
Sbjct:   50 AELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116          
BLAST of FC925360 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.523e-23
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 2
Query:   20 KLPNVLFLKVDVDELKSVATDWALEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHPA 196
            KLPNVLFLKVD DELKSVA+DWA++AMPTFMFLKEGKI+DKVVGAKK+ELQ TIAKH A
Sbjct:   56 KLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114          
BLAST of FC925360 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.360e-20
Identity = 48/71 (67.61%), Postives = 62/71 (87.32%), Query Frame = 2
Query:    2 LAEPP*KLPNVLFLKVDVDELKSVATDWALEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH--PATASA 208
            LA+   K+P+V+FLKVDVDELK+V+ +W++EAMPTF+F+K+GK VD+VVGAKKEELQQTI KH  PAT +A
Sbjct:   56 LADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPATVTA 126          
BLAST of FC925360 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.723e-16
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 2
Query:   20 KLPNVLFLKVDVDELKSVATDWALEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHPATAS 205
            K P + FLKVDVDEL+ VA +W +EAMPTF+F+K+GK VDKVVGAKK++L++ +A   A A+
Sbjct:   54 KFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAALAAAAT 115          
BLAST of FC925360 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.006e-15
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 2
Query:    5 AEPP*KLPNVLFLKVDVDELKSVATDWALEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHPATASA 208
            AE   K P  +FLKVDVDELK VA  + +EAMPTF+F+K+G   DKVVGA+K++LQ TI KH    +A
Sbjct:   51 AEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of FC925360 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.006e-15
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 2
Query:    5 AEPP*KLPNVLFLKVDVDELKSVATDWALEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHPATASA 208
            AE   K P  +FLKVDVDELK VA  + +EAMPTF+F+K+G   DKVVGA+K++LQ TI KH    +A
Sbjct:   51 AEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of FC925360 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.115e-14
Identity = 35/62 (56.45%), Postives = 50/62 (80.65%), Query Frame = 2
Query:   23 LPNVLFLKVDVDELKSVATDWALEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHPATASA 208
            + + +F KVDVDEL++VA ++ +EAMPTF+ +K+G +VDKVVGA+KE+L  TIAKH   A+A
Sbjct:   58 MSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTGVATA 119          
BLAST of FC925360 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.535e-14
Identity = 34/62 (54.84%), Postives = 49/62 (79.03%), Query Frame = 2
Query:    5 AEPP*KLPNVLFLKVDVDELKSVATDWALEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 190
            AE   K  NV+F K+DVDEL++VA ++ +EAMPTF+F+KEG I+D+VVGA K+E+ + + KH
Sbjct:   50 AEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of FC925360 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.228e-14
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = 2
Query:   23 LPNVLFLKVDVDELKSVATDWALEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHPATASA 208
            + + +F KVDVDEL+SVA ++ +EAMPTF+F+K G++VDK+VGA KE+LQ  I KH    +A
Sbjct:   58 MSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGVTTA 119          
The following BLAST results are available for this feature:
BLAST of FC925360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
TRXH_RICCO2.648e-2482.35Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH2_TOBAC7.705e-2482.09Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_ARATH6.523e-2386.44Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH1_TOBAC1.360e-2067.61Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_PICMA7.723e-1659.68Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_ORYSJ5.006e-1557.35Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI5.006e-1557.35Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH2_BRANA1.115e-1456.45Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH5_ARATH5.535e-1454.84Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH4_ARATH7.228e-1454.84Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YI03FM1 TF Citrus clementina cDNA clone KN0AAP8YI03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925360 ID=FC925360; Name=FC925360; organism=Citrus clementina; type=EST; length=242bp
CTTGGCAGAGCCCCCTTAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTG
ATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCATTGGAGGCCATG
CCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGG
AGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCCGGCAACTG
CTTCTGCCTAATAAGTTACAACTATCCTCCTGCCTTTTGTCT
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