FC925362

Overview
NameFC925362
Unique NameFC925362
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3798 contig Ccv1_Contig3798:1..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: AB27B_ARATH (ABC transporter B family member 27 OS=Arabidopsis thaliana GN=ABCB27 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.574e-22
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQ 199
            EYLV DAMDSLM GRTVLVIAHRLSTV++AD VAV+SDGE+ E GTH+ELLS  G+YT LVKRQLQ
Sbjct:  571 EYLVQDAMDSLMAGRTVLVIAHRLSTVKTADCVAVISDGEVAEKGTHDELLSLNGIYTNLVKRQLQ 636          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: ABCB8_DANRE (ATP-binding cassette sub-family B member 8, mitochondrial OS=Danio rerio GN=abcb8 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.111e-16
Identity = 40/64 (62.50%), Postives = 52/64 (81.25%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            E +V +A+D    GRTVL+IAHRLST+Q+AD + V+S+G IVE+GTH ELLSKGG+Y  L+KRQ
Sbjct:  645 ERVVQEALDRATTGRTVLIIAHRLSTIQAADLICVMSNGRIVEAGTHLELLSKGGLYAELIKRQ 708          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: ABCB8_PONAB (ATP-binding cassette sub-family B member 8, mitochondrial OS=Pongo abelii GN=ABCB8 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.171e-14
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ-LQEPKT 211
            E +V +A+D    GRTVLVIAHRLSTV+ A  + V++DG + E+GTHEELL KGG+Y  L++RQ L  P+T
Sbjct:  630 ERVVQEALDRASAGRTVLVIAHRLSTVRGAHRIVVMADGRVWEAGTHEELLKKGGLYAELIRRQALDAPRT 700          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: ABCB8_HUMAN (ATP-binding cassette sub-family B member 8, mitochondrial OS=Homo sapiens GN=ABCB8 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.171e-14
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ-LQEPKT 211
            E +V +A+D    GRTVLVIAHRLSTV+ A  + V++DG + E+GTHEELL KGG+Y  L++RQ L  P+T
Sbjct:  647 ERVVQEALDRASAGRTVLVIAHRLSTVRGAHCIVVMADGRVWEAGTHEELLKKGGLYAELIRRQALDAPRT 717          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: ABCB4_DICDI (ABC transporter B family member 4 OS=Dictyostelium discoideum GN=abcB4 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.171e-14
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 202
            E LV  A+D+LMKGRT LVIAHRLSTVQ+AD + V+S G+I E G H EL++  G+Y  LV+RQL +
Sbjct:  698 ELLVQTALDNLMKGRTTLVIAHRLSTVQNADLIGVLSHGKIAEFGNHNELMNHKGLYYKLVQRQLSQ 764          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: ABCB8_RAT (ATP-binding cassette sub-family B member 8, mitochondrial OS=Rattus norvegicus GN=Abcb8 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14
Identity = 36/64 (56.25%), Postives = 52/64 (81.25%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            E +V +A+D    GRTVLVIAHRLSTV++A ++ V+++G++ E+GTHEELL KGG+Y  L++RQ
Sbjct:  629 ERIVQEALDRASAGRTVLVIAHRLSTVRAAHSIIVMANGQVCEAGTHEELLQKGGLYAELIRRQ 692          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: ABCB8_MOUSE (ATP-binding cassette sub-family B member 8, mitochondrial OS=Mus musculus GN=Abcb8 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14
Identity = 36/64 (56.25%), Postives = 53/64 (82.81%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            E +V +A+D    GRTVLVIAHRLSTV++A ++ V+++G++ E+GTHEELL KGG+Y+ L++RQ
Sbjct:  629 ERVVQEALDRASAGRTVLVIAHRLSTVRAAHSIIVMANGQVCEAGTHEELLKKGGLYSELIRRQ 692          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: ABCBA_HUMAN (ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVKRQ 193
            EYLV +A+D LM GRTVLVIAHRLST+++A+ VAV+  G+I E G HEELLSK  G+Y  L+ +Q
Sbjct:  669 EYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 733          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: ABCB1_DICDI (ABC transporter B family member 1 OS=Dictyostelium discoideum GN=abcB1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVKRQL 196
            EYLV  A+D +MK RTV+VIAHRLSTV +A+TV V++ G+I E GTH+ELL+   G+Y  LVKRQL
Sbjct:  840 EYLVKQAIDEIMKDRTVIVIAHRLSTVINANTVVVINQGKIEEMGTHKELLNNTDGIYHNLVKRQL 905          
BLAST of FC925362 vs. ExPASy Swiss-Prot
Match: ABCB2_DICDI (ABC transporter B family member 2 OS=Dictyostelium discoideum GN=abcB2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.691e-13
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 193
            E LV  +++ LM GRT +VIAHRLST+Q AD +AVV  G IVE GTH EL +  GVYT LV RQ
Sbjct:  648 ELLVQQSIEKLMIGRTTIVIAHRLSTIQDADQIAVVKGGAIVEIGTHPELYALNGVYTQLVNRQ 711          

HSP 2 Score: 73.559 bits (179), Expect = 1.432e-12
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 2
Query:    2 EYLVLDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 196
            E +V  A+D++ KGRT +VIAHRLSTV  AD + VV +G++VE GTHE LL++ G Y  LV RQ+
Sbjct: 1333 EKVVQVALDNVSKGRTSIVIAHRLSTVIDADLIVVVKEGKVVELGTHETLLAENGFYAELVSRQM 1397          
The following BLAST results are available for this feature:
BLAST of FC925362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
AB27B_ARATH7.574e-2278.79ABC transporter B family member 27 OS=Arabidopsis ... [more]
ABCB8_DANRE8.111e-1662.50ATP-binding cassette sub-family B member 8, mitoch... [more]
ABCB8_PONAB1.171e-1456.34ATP-binding cassette sub-family B member 8, mitoch... [more]
ABCB8_HUMAN1.171e-1456.34ATP-binding cassette sub-family B member 8, mitoch... [more]
ABCB4_DICDI1.171e-1459.70ABC transporter B family member 4 OS=Dictyostelium... [more]
ABCB8_RAT2.609e-1456.25ATP-binding cassette sub-family B member 8, mitoch... [more]
ABCB8_MOUSE2.609e-1456.25ATP-binding cassette sub-family B member 8, mitoch... [more]
ABCBA_HUMAN5.813e-1461.54ATP-binding cassette sub-family B member 10, mitoc... [more]
ABCB1_DICDI5.813e-1462.12ABC transporter B family member 1 OS=Dictyostelium... [more]
ABCB2_DICDI1.691e-1360.94ABC transporter B family member 2 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YI04FM1 TF Citrus clementina cDNA clone KN0AAP8YI04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925362 ID=FC925362; Name=FC925362; organism=Citrus clementina; type=EST; length=789bp
CGAGTACCTGGTGCTTGACGCCATGGATTCTCTTATGAAGGGAAGGACTG
TTCTCGTTATAGCCCATCGACTATCAACTGTCCAAAGTGCAGACACCGTA
GCTGTTGTTTCTGATGGTGAAATTGTTGAAAGTGGCACTCATGAAGAGCT
CCTTAGCAAAGGTGGTGTATACACTGCACTAGTGAAGAGACAACTACAGG
AACCCAAAACTGAAATCTAGTTCTAAACACAACACCTATGTATAACTAAG
TTCTAGAAATGGCAAATTCGACAATAATACACTGCCCTCTTTTAGATATA
CAAATGTATATCCATCCCATTCTGTGTGGCACAAAAATTCTCCTAGTATT
AGCCTTTAACCATCTATAGCCACCATTTACATTTAGGACCTCTTAAAAAT
ACTTTTCATGCTTTTCTTTCTTCAAGAGTCGTATGTCTCTGCCGCCCGCT
CGTGTCACAACTTTTAGCCAATGTATCATTTTGCCATGCTAGTGGTTAGA
TGGCAGAACATGAAGATTGGAAATGGACTCCACCTGCTCTTAGCCTGTGG
TGGCTCCTTATCATGAGTAAATGCAGGTTGTGTGAAATGTTAAGCACGTG
ATGGGATCAGAAATCGATATATGGTTCTGTTGTATTTGAAAGCAGTTGAA
TTTGTAAAATTTTAAGATGCATCAGGCATTTCAAATGTTTCCTTCTGCAC
CACCATCTGAAACTTTTTATCTCGTTTGAATCGCCGTGGACAAAATAGGT
ACCGCGTTTGCTTTTGTAGTTTATGGAAACTATTGATCA
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