FC925368

Overview
NameFC925368
Unique NameFC925368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925368_ssr72 microsatellite FC925368_ssr72:72..83. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3799 contig Ccv1_Contig3799:1..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925368 vs. ExPASy Swiss-Prot
Match: HYES_HUMAN (Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.119e-32
Identity = 72/202 (35.64%), Postives = 105/202 (51.98%), Query Frame = 1
Query:  124 INMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIPKPLCIPKDTGLSTL----PDPSALPSWVSEEDV 717
            + +H   +G+GPAV   HGFPE WYSWR Q+  L+  GYR +A D++GYG++ APP +  Y                   Q   +GHDWG ++ WY  LF P+RV+A+ +++ PF P NP + PL + +A    DY +  FQEPG  E E  Q + +R  K          L + K      L    P+  +L   V+EE++
Sbjct:  248 VRLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESIKANPVFDYQL-YFQEPGVAEAELEQ-NLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEI 447          
BLAST of FC925368 vs. ExPASy Swiss-Prot
Match: HYES_PIG (Epoxide hydrolase 2 OS=Sus scrofa GN=EPHX2 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.449e-31
Identity = 72/203 (35.47%), Postives = 105/203 (51.72%), Query Frame = 1
Query:  121 GINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIPKPLCIPKDTGLSTL----PDPSALPSWVSEEDV 717
            G+ +H   +G+GPAV   HGFPE W+SWR Q+  L+  G+R +A D++GYG++ APP +  Y+                  Q   +GHDWG ++ W   LF P+RV+A+ +++ PF P NP V P+   +A    DY +  FQEPG  E E  Q +  R  K F        L   +   L  L    P+  +L   V+EED+
Sbjct:  247 GVRLHFVEMGSGPAVCLCHGFPESWFSWRYQIPALAQAGFRVLAVDMKGYGESSAPPEIEEYSLEVLCKDMVTFLNKLGLSQAVFIGHDWGGVLVWNMALFYPERVRAVASLNTPFMPSNPNVSPMEIIKANPVFDYQL-YFQEPGVAEAELEQ-NLDRTFKNFFRAHDETFLTTNRVRELGGLFVGTPEEPSLSRLVTEEDI 447          
BLAST of FC925368 vs. ExPASy Swiss-Prot
Match: HYES_RAT (Epoxide hydrolase 2 OS=Rattus norvegicus GN=Ephx2 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.216e-29
Identity = 59/164 (35.98%), Postives = 90/164 (54.88%), Query Frame = 1
Query:  121 GINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKF 612
            GI +H   +G+GPA+   HGFPE W+SWR Q+  L+  G+R +A D++GYGD+ +PP +  Y                   Q   +GHDW  ++ W   LF P+RV+A+ +++ P  P NP V P+   R++   +Y +  FQEPG  E E  + + +R  K F
Sbjct:  245 GIRLHFVEMGSGPAICLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCEEMVTFLNKLGIPQAVFIGHDWAGVLVWNMALFHPERVRAVASLNTPLMPPNPEVSPMEVIRSIPVFNYQL-YFQEPGVAEAELEK-NMSRTFKSF 406          
BLAST of FC925368 vs. ExPASy Swiss-Prot
Match: HYES_MOUSE (Epoxide hydrolase 2 OS=Mus musculus GN=Ephx2 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.602e-28
Identity = 59/164 (35.98%), Postives = 91/164 (55.49%), Query Frame = 1
Query:  121 GINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKF 612
            GI +H   +G+GPA+   HGFPE W+SWR Q+  L+  G+R +A D++GYGD+ +PP +  Y                   Q   +GHDW  ++ W   LF P+RV+A+ +++ PF P +P V P+   R++   +Y +  FQEPG  E E  + + +R  K F
Sbjct:  245 GIRLHFVEMGSGPALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVASLNTPFMPPDPDVSPMKVIRSIPVFNYQL-YFQEPGVAEAELEK-NMSRTFKSF 406          
BLAST of FC925368 vs. ExPASy Swiss-Prot
Match: YFHM_BACSU (AB hydrolase superfamily protein yfhM OS=Bacillus subtilis GN=yfhM PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 61/176 (34.66%), Postives = 88/176 (50.00%), Query Frame = 1
Query:   85 MEKIEHTTVATNGINMHVASIGT--GPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPPRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMK 606
            M+ ++   V TNGI +HVA+ G   GP ++ +HGFPE WY W+NQ+  L   GYR IAPD RGY  +D P  + SY                   +  ++GHDWG  +AW+    RP+ ++ L+ +++P P     V PL  +   +    YI  FQ P   E    + D   L K
Sbjct:    1 MDGVKCQFVNTNGITLHVAAAGREDGPLIVLLHGFPEFWYGWKNQIKPLVDAGYRVIAPDQRGYNLSDKPEGIDSYRIDTLRDDIIGLITQFTDEKAIVIGHDWGGAVAWHLASTRPEYLEKLIAINIPHPHVMKTVTPL--YPPQWLKSSYIAYFQLPDIPEASLRENDYDTLDK 174          
BLAST of FC925368 vs. ExPASy Swiss-Prot
Match: EPHX3_HUMAN (Epoxide hydrolase 3 OS=Homo sapiens GN=EPHX3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.102e-20
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 1
Query:  115 TNGINMHVASIG--TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMS 459
            ++G+ +H  S G   GP +LF+HGFPE W+SWR QL    SR +  +A DLRGYG +DAP  V  YT                  +  LV HDWGAL+AW+F ++ P  V+ +V +S
Sbjct:   82 SSGLRLHYVSAGRGNGPLMLFLHGFPENWFSWRYQLREFQSR-FHVVAVDLRGYGPSDAPRDVDCYTIDLLLVDIKDVILGLGYSKCILVAHDWGALLAWHFSIYYPSLVERMVVVS 197          
BLAST of FC925368 vs. ExPASy Swiss-Prot
Match: EPHX4_MOUSE (Epoxide hydrolase 4 OS=Mus musculus GN=Ephx4 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 54/160 (33.75%), Postives = 78/160 (48.75%), Query Frame = 1
Query:  100 HTTVATNGINMHVASIGTG--PAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFPP-------RNPAVRPLNNFRAVYGDDYYICRFQE 552
            +  +  +G+  H  + G    P +L +HGFPE WYSWR+QL    S  YR +A DLRGYG++DAP    SY                   +  L+GHDWG +IAW   +  P+ +  L+ ++ P P        R+PA      FR+ +   + I RF E
Sbjct:   71 YVRIKDSGLRFHYVAAGERGKPLMLLLHGFPEFWYSWRHQLREFKSE-YRVVALDLRGYGESDAPAHQESYKLDCLIADIKDILDSLGYSKCVLIGHDWGGMIAWLIAVCYPEMIMKLIVINFPHPSVFTEYILRHPA----QLFRSSFYYFFQIPRFPE 225          
BLAST of FC925368 vs. ExPASy Swiss-Prot
Match: EPHX4_HUMAN (Epoxide hydrolase 4 OS=Homo sapiens GN=EPHX4 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.711e-18
Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 1
Query:  100 HTTVATNGINMHVASIGTG--PAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 471
            +  +  +G+  H  + G    P +L +HGFPE WYSWR QL    S  YR +A DLRGYG+TDAP    +Y                   +  L+GHDWG +IAW   +  P+ V  L+ ++ P P
Sbjct:   73 YVRIKDSGLRFHYVAAGERGKPLMLLLHGFPEFWYSWRYQLREFKSE-YRVVALDLRGYGETDAPIHRQNYKLDCLITDIKDILDSLGYSKCVLIGHDWGGMIAWLIAICYPEMVMKLIVINFPHP 197          
BLAST of FC925368 vs. ExPASy Swiss-Prot
Match: EPHX3_XENTR (Epoxide hydrolase 3 OS=Xenopus tropicalis GN=ephx3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.742e-18
Identity = 48/120 (40.00%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  118 NGINMHVASIGT--GPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVPFP 471
            +GI  H  + G    P +L +HGFPE WYSWR QL   S+ GYR +A DLRG+G +DAP  +  Y                   +  LVGHDWG  +AW F +   D V  L+ M+ P P
Sbjct:   83 SGIRFHYVASGDKRNPLMLLLHGFPENWYSWRYQLDEFSN-GYRTVAIDLRGFGGSDAPSRLEDYKMEILLQDLQDLIRGLGYSRCVLVGHDWGGTLAWTFAVRHRDMVTHLIVMNAPHP 201          
BLAST of FC925368 vs. ExPASy Swiss-Prot
Match: EPHX3_MOUSE (Epoxide hydrolase 3 OS=Mus musculus GN=Ephx3 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 1
Query:  109 VATNGINMHVASIG--TGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALVNMSVP 465
            V ++G+ +H  S G   GP +LF+HGFPE W+SWR QL    S  +  +A D+RGY  +DAP  V  YT                  +  LV HDWGA +AW F ++ P  V+ +V  + P
Sbjct:   87 VKSSGLRLHYVSAGHGNGPLMLFLHGFPENWFSWRYQLREFQSH-FHVVAVDMRGYSPSDAPKEVDCYTIDLLLDDIKDTILGLGYSKCILVSHDWGASLAWEFSIYYPSLVERMVVANGP 206          
The following BLAST results are available for this feature:
BLAST of FC925368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HYES_HUMAN3.119e-3235.64Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 ... [more]
HYES_PIG3.449e-3135.47Epoxide hydrolase 2 OS=Sus scrofa GN=EPHX2 PE=2 SV... [more]
HYES_RAT4.216e-2935.98Epoxide hydrolase 2 OS=Rattus norvegicus GN=Ephx2 ... [more]
HYES_MOUSE1.602e-2835.98Epoxide hydrolase 2 OS=Mus musculus GN=Ephx2 PE=1 ... [more]
YFHM_BACSU6.300e-2534.66AB hydrolase superfamily protein yfhM OS=Bacillus ... [more]
EPHX3_HUMAN6.102e-2041.88Epoxide hydrolase 3 OS=Homo sapiens GN=EPHX3 PE=2 ... [more]
EPHX4_MOUSE1.503e-1833.75Epoxide hydrolase 4 OS=Mus musculus GN=Ephx4 PE=2 ... [more]
EPHX4_HUMAN5.711e-1836.51Epoxide hydrolase 4 OS=Homo sapiens GN=EPHX4 PE=2 ... [more]
EPHX3_XENTR9.742e-1840.00Epoxide hydrolase 3 OS=Xenopus tropicalis GN=ephx3... [more]
EPHX3_MOUSE1.272e-1738.02Epoxide hydrolase 3 OS=Mus musculus GN=Ephx3 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YI07FM1 TF Citrus clementina cDNA clone KN0AAP8YI07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925368 ID=FC925368; Name=FC925368; organism=Citrus clementina; type=EST; length=722bp
CGTTCCTTTCATTCTTTTTAAACAGAGCCTAATCCTGAAACCTTCAGATT
TCAGAGTTGCACCAAAAGGAAAAACAAACAAACAATGGAGAAAATAGAGC
ACACAACAGTAGCCACTAACGGCATAAACATGCACGTGGCATCAATAGGG
ACAGGCCCAGCAGTTCTCTTCATTCACGGCTTCCCTGAACTCTGGTATTC
CTGGCGCAACCAGCTCCTCTATCTCTCTTCCCGCGGCTACCGTGCCATTG
CCCCAGACCTTCGTGGATACGGCGACACCGACGCCCCACCCTCGGTCACG
TCGTACACGGCACTCCATCTTGTCGGTGACCTCATCGGCCTCCTTGATAA
ATTGGGTATCCATCAAGTTTTCCTAGTGGGTCATGACTGGGGTGCTTTGA
TTGCTTGGTATTTTTGTTTGTTTAGGCCGGACAGAGTCAAGGCCTTAGTC
AACATGAGCGTCCCCTTTCCTCCCAGAAACCCGGCTGTGAGACCTCTTAA
TAACTTCAGGGCTGTCTATGGTGATGATTATTATATCTGCAGATTTCAGG
AACCTGGAGAGATTGAAGAAGAGTTTGCTCAGATTGATACTGCAAGACTT
ATGAAGAAATTTCTGTGTTTGCGCATTCCAAAACCACTTTGTATACCCAA
AGATACAGGACTCAGTACTCTACCGGATCCTTCAGCGTTGCCCTCTTGGG
TGTCAGAAGAAGATGTCAATTA
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