FC925396

Overview
NameFC925396
Unique NameFC925396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925396_ssr2 microsatellite FC925396_ssr2:2..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig871 contig Ccv1_Contig871:167..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.027e-64
Identity = 116/145 (80.00%), Postives = 123/145 (84.83%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAVLG +EGVKGT+ FTQEGDGPTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAG EHGAPED+ RHA            T    +VD+QIPLSG NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC
Sbjct:    1 MVKAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 145          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 1.048e-63
Identity = 115/145 (79.31%), Postives = 124/145 (85.52%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAVLG +EGVKGT+ FTQEGDGPTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPH+NPA KEHGAPED+NRHA             A   V D+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVAC
Sbjct:    1 MVKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVAC 145          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.369e-63
Identity = 113/145 (77.93%), Postives = 124/145 (85.52%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVK VAVL  +EGV GT+ FTQEGDGPTTV+G++SGLKPGPHGFHVHALGDTTNGC+STGPHFNPAGKEHGAP+D+ RHA            TA FT+VD QIPL+GP+SIIGRAVVVHADPDDLGKGGHELSKTTGN GGRVAC
Sbjct:    1 MVKGVAVLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKGGHELSKTTGNTGGRVAC 145          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.335e-63
Identity = 112/145 (77.24%), Postives = 124/145 (85.52%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAV VL  +EGV GTV FTQEG GPTTV+G++SGL+PG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPED+ RHA            TATFT++D+QIPL+GPNSI+GRAVVVHADPDDLG+GGHELSK TGNAGGRVAC
Sbjct:    1 MVKAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVAC 145          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 8.874e-63
Identity = 113/145 (77.93%), Postives = 123/145 (84.83%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAVLG ++GVKGT+ FTQEGDGPT V+GS+SGLKPG HGFHVHALGDTTNGCMSTGPH+NPA KEHGAPED+NRHA             A   V D+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVAC
Sbjct:    1 MVKAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVAC 145          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.514e-62
Identity = 112/145 (77.24%), Postives = 123/145 (84.83%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAVL  +EGV GT+ F+QEGDGPTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAP DDNRHA            TA+FT+ D QIPL+G NS+IGRAVVVH DPDDLGKGGHELSK+TGNAGGRVAC
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVAC 145          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.582e-62
Identity = 112/145 (77.24%), Postives = 123/145 (84.83%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            M KAV VL  +EGV GTV F QEGDGPTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NP GKEHGAPEDD RHA            TATFT++D+QIPLSGPNSI+GRAVVVHA+PDDLG+GGHELSKTTGNAGGRVAC
Sbjct:    1 MGKAVVVLSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVAC 145          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.372e-62
Identity = 113/145 (77.93%), Postives = 123/145 (84.83%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAVL G+EGV+GTV F QEG+GPTT++GSLSGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPED NRHA            T  FTV D+QIPL+G NS++GRAVVVHAD DDLGKGGHELSKTTGNAGGR+AC
Sbjct:    1 MVKAVAVLTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHADSDDLGKGGHELSKTTGNAGGRLAC 145          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.372e-62
Identity = 111/145 (76.55%), Postives = 122/145 (84.14%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAVAVL  +EGV GT+ FTQ  DGPTTV+G +SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDD RHA              +F+++D+QIPL+GPNSI+GRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFTQAADGPTTVTGEISGLKPGHHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 145          
BLAST of FC925396 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.372e-62
Identity = 113/145 (77.93%), Postives = 122/145 (84.14%), Query Frame = 3
Query:   69 MVKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 503
            MVKAV VLG +E VKGT+ F QEGDGPTTV+GS+SGLKPG HGFH+HALGDTTNGCMSTGPH+NPAGKEHGAPED+ RHA             A   VVD+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC
Sbjct:    1 MVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 145          
The following BLAST results are available for this feature:
BLAST of FC925396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_ANACO8.027e-6480.00Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC4_MAIZE1.048e-6379.31Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC_PAUKA1.369e-6377.93Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC1_MESCR2.335e-6377.24Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC5_MAIZE8.874e-6377.93Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC_IPOBA1.514e-6277.24Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_SPIOL2.582e-6277.24Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_ZANAE3.372e-6277.93Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC_CARPA3.372e-6276.55Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC1_ORYSJ3.372e-6277.93Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH10FM1 TF Citrus clementina cDNA clone KN0AAP3YH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925396 ID=FC925396; Name=FC925396; organism=Citrus clementina; type=EST; length=678bp
CCTCTCTCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTT
CTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAAC
TGAGGGTGTCAAGGGAACTGTTTCCTTTACCCAGGAAGGAGATGGTCCAA
CAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCCGGTCCTCATGGATTC
CATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACC
CCACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATC
GTCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCT
ACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCTAT
TATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGG
GTGGACATGAGCTCAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCT
TGCGGCATCATTGGCATCCAAGGATGAAGCGGCTTCTCTTTGGACCATAA
TAAATTCATTTGATATGATGTGTTGAATGCATTCTGGTCCATACATGCTT
GAGTGTGACTTTTTGAGACTATGATCTTGAATAAAAAAAATCTAAAACTT
TGTTGTGTAAAAAAAAAAAAAAAAAAAA
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