FC925399

Overview
NameFC925399
Unique NameFC925399
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1988 contig Ccv1_Contig1988:1..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL119_ARATH (Germin-like protein subfamily 1 member 19 OS=Arabidopsis thaliana GN=At5g39180 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.103e-53
Identity = 100/141 (70.92%), Postives = 115/141 (81.56%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            DP  LQD CVAI+DPK+GVFVNGKFCKDPK A+AEDFF SGL + G T N++  + T  NV+QIPGLNTLGIS  RIDYAPYGQ PPH HPRA+EI +++EGTLYVGFV+S+Q NN L AKVLN GDVFVFP G+ HFQ N
Sbjct:   23 DPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVN 163          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL117_ARATH (Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.103e-53
Identity = 100/141 (70.92%), Postives = 115/141 (81.56%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            DP  LQD CVAI+DPK+GVFVNGKFCKDPK A+AEDFF SGL + G T N++  + T  NV+QIPGLNTLGIS  RIDYAPYGQ PPH HPRA+EI +++EGTLYVGFV+S+Q NN L AKVLN GDVFVFP G+ HFQ N
Sbjct:   23 DPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVN 163          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.103e-53
Identity = 100/141 (70.92%), Postives = 115/141 (81.56%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            DP  LQD CVAI+DPK+GVFVNGKFCKDPK A+AEDFF SGL + G T N++  + T  NV+QIPGLNTLGIS  RIDYAPYGQ PPH HPRA+EI +++EGTLYVGFV+S+Q NN L AKVLN GDVFVFP G+ HFQ N
Sbjct:   23 DPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVN 163          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 4.686e-53
Identity = 99/141 (70.21%), Postives = 114/141 (80.85%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            DP  LQD CVAI D K+GVFVNGKFCKDPK A+AEDFF+SGL + G T N++  + T  NV+QIPGLNTLGIS  RIDYAPYGQ PPH HPRA+EI +++EGTLYVGFV+S+Q NN L AKVLN GDVFVFP G+ HFQ N
Sbjct:   24 DPSPLQDFCVAIGDLKNGVFVNGKFCKDPKQAKAEDFFYSGLNQAGTTNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVN 164          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL113_ARATH (Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.363e-52
Identity = 98/141 (69.50%), Postives = 115/141 (81.56%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            DP  LQD CVAI+D K+GVFVNGKFCKDPK A+AEDFFFSGL + G+T N++  + T  NV+QIPGLNT+GIS  RIDYAPYGQ PPH HPRA+EI +++EGTLYVGFV+S+Q NN L AKVL  GDVFVFP G+ HFQ N
Sbjct:   24 DPSPLQDFCVAIDDLKNGVFVNGKFCKDPKQAKAEDFFFSGLNQAGSTNNKVRSNVTTVNVDQIPGLNTMGISLVRIDYAPYGQNPPHTHPRATEILVLIEGTLYVGFVSSNQDNNRLFAKVLYPGDVFVFPIGMIHFQVN 164          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 5.181e-52
Identity = 102/164 (62.20%), Postives = 120/164 (73.17%), Query Frame = 2
Query:   23 MKVIQFLIGFXXXXXXXXXXXXTDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            M+V Q L+ F             DP  LQD CVAI+D K GVFVNG+FCKDPK   A+DFFFSGL  PGNT N++G + T  NV+QIPGLNT+GIS  RIDYAP+GQ PPH HPR SEI +++EGTLYVGFV+S+Q NN L AKVL+ GDVFVFP G+ HFQ N
Sbjct:    1 MRVSQSLVPFAIIALVLSFVNAYDPSPLQDFCVAIDDLK-GVFVNGRFCKDPKRVDAKDFFFSGLNMPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVN 163          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL120_ARATH (Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 6.766e-52
Identity = 102/164 (62.20%), Postives = 120/164 (73.17%), Query Frame = 2
Query:   23 MKVIQFLIGFXXXXXXXXXXXXTDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            M+V Q L+ F             DP  LQD CVAI+D K GVFVNG+FCKDPK   A+DFFFSGL  PGNT N++G + T  NV+QIPGLNT+GIS  RIDYAP+GQ PPH HPR SEI +++EGTLYVGFV+S+Q NN L AKVL+ GDVFVFP G+ HFQ N
Sbjct:    1 MRVSQSLVPFAIIALVLSFVNAYDPSPLQDFCVAIDDLK-GVFVNGRFCKDPKRVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVN 163          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.154e-51
Identity = 102/164 (62.20%), Postives = 120/164 (73.17%), Query Frame = 2
Query:   23 MKVIQFLIGFXXXXXXXXXXXXTDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            M+V Q LI F             DP  LQD CVAI+D K GVFVNG+FCKDP+   A+DFFFSGL  PGNT N++G + T  NV+QIPGLNT+GIS  RIDYAP+GQ PPH HPR SEI +++EGTLYVGFV+S+Q NN L AKVL+ GDVFVFP G+ HFQ N
Sbjct:    1 MRVSQSLIPFAIIALVLSFVNAYDPSPLQDFCVAIDDLK-GVFVNGRFCKDPERVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQLN 163          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL18_ARATH (Germin-like protein subfamily 1 member 8 OS=Arabidopsis thaliana GN=GLP9 PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 4.386e-51
Identity = 96/166 (57.83%), Postives = 115/166 (69.28%), Query Frame = 2
Query:   17 ITMKVIQFLIGFXXXXXXXXXXXXTDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            +T+K + FL               +DP  LQD CV +N P DGVFVNGKFCKDP++  A+DFFFS L +PGNT N +G + T  NV  + GLNTLGIS  RIDYAP GQ PPH HPRA+EI +V +GTL VGF++S+Q  N L AK LN GDVFVFP+GL HFQFN
Sbjct:    1 MTIKSLSFLAALSLFALTLPLVIASDPSPLQDFCVGVNTPADGVFVNGKFCKDPRIVFADDFFFSSLNRPGNTNNAVGSNVTTVNVNNLGGLNTLGISLVRIDYAPNGQNPPHTHPRATEILVVQQGTLLVGFISSNQDGNRLFAKTLNVGDVFVFPEGLIHFQFN 166          
BLAST of FC925399 vs. ExPASy Swiss-Prot
Match: GL17_ARATH (Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.560e-48
Identity = 94/141 (66.67%), Postives = 110/141 (78.01%), Query Frame = 2
Query:   92 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLNHFQFN 514
            DP  LQD CVA++D   GVFVNGKFCKDPK  +AEDFF SGL   GNT NR+G + T+ NV++IPGLNTLG+S  RID+AP GQ PPH HPRA+EI +V+EGTL VGFVTS+Q NN L +KVL  GDVFVFP G+ HFQ N
Sbjct:   26 DPSPLQDFCVAVDDAS-GVFVNGKFCKDPKYVKAEDFFTSGLNIAGNTINRVGSNVTNVNVDKIPGLNTLGVSLVRIDFAPGGQNPPHTHPRATEILVVVEGTLLVGFVTSNQDNNRLFSKVLYPGDVFVFPIGMIHFQVN 165          
The following BLAST results are available for this feature:
BLAST of FC925399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL119_ARATH2.103e-5370.92Germin-like protein subfamily 1 member 19 OS=Arabi... [more]
GL117_ARATH2.103e-5370.92Germin-like protein subfamily 1 member 17 OS=Arabi... [more]
GL115_ARATH2.103e-5370.92Germin-like protein subfamily 1 member 15 OS=Arabi... [more]
GL114_ARATH4.686e-5370.21Germin-like protein subfamily 1 member 14 OS=Arabi... [more]
GL113_ARATH1.363e-5269.50Germin-like protein subfamily 1 member 13 OS=Arabi... [more]
GL118_ARATH5.181e-5262.20Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL120_ARATH6.766e-5262.20Germin-like protein subfamily 1 member 20 OS=Arabi... [more]
GL116_ARATH1.154e-5162.20Germin-like protein subfamily 1 member 16 OS=Arabi... [more]
GL18_ARATH4.386e-5157.83Germin-like protein subfamily 1 member 8 OS=Arabid... [more]
GL17_ARATH1.560e-4866.67Germin-like protein subfamily 1 member 7 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH11FM1 TF Citrus clementina cDNA clone KN0AAP3YH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925399 ID=FC925399; Name=FC925399; organism=Citrus clementina; type=EST; length=516bp
CACATCCTGTGACTTAATCACCATGAAGGTAATTCAATTTCTTATAGGTT
TTGCCCTCTTGGCTTTGGCTTCTTCTTTGGCCTCTGCCACTGACCCTGGC
CATCTTCAAGATGTCTGTGTAGCCATCAATGACCCCAAGGATGGTGTGTT
TGTGAATGGGAAGTTCTGCAAGGACCCCAAGCTTGCGAGAGCAGAAGATT
TCTTCTTCTCAGGGCTAGGCAAGCCTGGAAACACAGCAAATCGACTTGGT
GTTGATGAAACAGATGCAAATGTTGAGCAAATTCCAGGACTCAACACCCT
TGGCATATCAGCATTCCGTATTGACTATGCACCATATGGCCAAAGGCCAC
CTCACATTCACCCCCGTGCCAGCGAAATCTTCTTAGTCCTGGAAGGAACT
CTTTATGTCGGTTTTGTGACATCAGACCAACTGAATAACACACTCATCGC
AAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCACAAGGTTTGAATC
ACTTCCAATTCAACAA
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