FC925400

Overview
NameFC925400
Unique NameFC925400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6125 contig Ccv1_Contig6125:353..1087. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925400 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.312e-22
Identity = 73/244 (29.92%), Postives = 102/244 (41.80%), Query Frame = 3
Query:   21 MDTSNDAAWV---PCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYG-SSTIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQXXXXXXXXXXXXXAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPI--GQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTMTSPGGFHT 734
            MDT +D  W    PCT C    + +FN   S++F  L C++  C+ +P+ TC    C +   YG  ST    ++ +T +  T  VP   FGC +   G                   +    L    FSYC+ S+ + S S +L LG    G P+    T L+ +    + YY+ L  I VG   + IP    Q       G IIDSGT  T L   AY AV   F  ++       S  G  T
Sbjct:  113 MDTGSDLIWTQCEPCTQCFSQPTPIFNPQDSSSFSTLPCESQYCQDLPSETCNNNECQYTYGYGDGSTTQGYMATETFTFETSSVPNIAFGCGEDNQG--FGQGNGAGLIGMGWGPLSLPSQLGVGQFSYCMTSYGSSSPS-TLALGSAASGVPEGSPSTTLIHSSLNPTYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLST 353          
BLAST of FC925400 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.713e-21
Identity = 71/247 (28.74%), Postives = 107/247 (43.32%), Query Frame = 3
Query:   21 MDTSNDAAWV---PCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYG-SSTIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQXXXXXXXXXXXXXAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPI------GQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTG-AGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTMTSPGGF 728
            MDT +D  W    PCT C   S+ +FN   S++F  L C +  C+ + +PTC    C +   YG  S    ++  +T++  +  +P  TFGC +   G                   +    L  + FSYC+    + S   +L LG +      G P     T L+++ +  + YY+ L  + VG   + I P A   N   G  G IIDSGT  T  V  AY +VR  F  ++   +   S  GF
Sbjct:  112 MDTGSDLIWTQCQPCTQCFNQSTPIFNPQGSSSFSTLPCSSQLCQALSSPTCSNNFCQYTYGYGDGSETQGSMGTETLTFGSVSIPNITFGCGENNQG--FGQGNGAGLVGMGRGPLSLPSQLDVTKFSYCMTPIGS-STPSNLLLGSLANSVTAGSPN----TTLIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQINLPVVNGSSSGF 351          
The following BLAST results are available for this feature:
BLAST of FC925400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP2_NEPGR2.312e-2229.92Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
NEP1_NEPGR9.713e-2128.74Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YD21FM1 TF Citrus clementina cDNA clone KN0AAP11YD21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925400 ID=FC925400; Name=FC925400; organism=Citrus clementina; type=EST; length=735bp
CACAAACCTTGCTCATGGCCATGGATACTAGCAATGATGCCGCTTGGGTT
CCATGCACTGGCTGTGTTGGCTGCTCTTCCACCGTTTTTAATTCTGCTCA
ATCCACCACATTCAAAAACCTTGGTTGCCAAGCTGCTCAATGCAAGCAGG
TACCCAATCCCACCTGCGGGGGTGGCGCGTGTGCATTCAATTTGACCTAC
GGCAGCTCCACCATTGCCGCAAACCTCTCACAGGACACTATCTCCCTGGC
CACTGATATAGTCCCTGGTTACACCTTCGGCTGCATCCAAAAGGCCACGG
GCAACTCGGTGCCGCCCCAAGGCCTGTTGGGCCTGGGTCGTGGCTCATTA
TCCCTTTTGGCACAAACACAGAACCTCTATCAGTCCACTTTTTCTTACTG
TTTGCCCAGCTTCAAGGCACTTAGCTTTTCTGGGTCATTAAGATTAGGAC
CCATTGGTCAGCCCAAGCGGATTAAGTATACACCATTGCTTAAAAACCCA
AGAAGATCATCACTTTACTATGTTAATTTGTTGGCCATTAGGGTTGGCAG
AAGAGTTGTTGATATCCCACCTGGTGCCTTACAGTTCAATCCCACAACCG
GCGCTGGCACTATTATTGATTCTGGCACAGTTTTTACCAGACTGGTGGCG
CCCGCTTACACCGCAGTGAGAGACGTGTTCCGTAGACGCGTAGGGAGTAA
CTTAACAATGACCTCCCCAGGCGGATTCCACACGT
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