FC925418

Overview
NameFC925418
Unique NameFC925418
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14975 contig Ccv1_Contig14975:3..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925418 vs. ExPASy Swiss-Prot
Match: IMP3_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.120e-49
Identity = 90/166 (54.22%), Postives = 127/166 (76.51%), Query Frame = 2
Query:  104 VNFLEWK-REGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 598
            V+FL W+  +    E  +L+RY +  R++Y +Y+ L   V++L   L+ +  RDPFR+  +  LL+KLY MG++P+R SL LCD +S SSFCRRRL T+L++L+ A+HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVD+SKIKR VLEYN++ DD+D
Sbjct:   16 VDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181          
BLAST of FC925418 vs. ExPASy Swiss-Prot
Match: IMP3_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus GN=IMP3 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.023e-48
Identity = 88/166 (53.01%), Postives = 126/166 (75.90%), Query Frame = 2
Query:  104 VNFLEWK-REGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 598
            V+FL W+  +    E  +L+RY +  R+DY +Y+ L   V++L   L+ +  RDPFR+  +  LL+KLY +G++P+R S  LCD ++ SSFCRRRL T+L++L+ A+HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVD+SKIKR VLEYN++ DD+D
Sbjct:   16 VDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181          
BLAST of FC925418 vs. ExPASy Swiss-Prot
Match: IMP3_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens GN=IMP3 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.450e-48
Identity = 88/166 (53.01%), Postives = 126/166 (75.90%), Query Frame = 2
Query:  104 VNFLEWK-REGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 598
            V+FL W+  +    E  +L+RY +  R+DY +Y+ L   V++L   L+ +  RD FR+  +  LL+KLY +G++P+R SL LCD ++ SSFCRRRL T+L++L+ A+HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVD+SKIKR VLEYN++ DD+D
Sbjct:   16 VDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181          
BLAST of FC925418 vs. ExPASy Swiss-Prot
Match: IMP3_YEAST (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae GN=IMP3 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.686e-48
Identity = 83/166 (50.00%), Postives = 126/166 (75.90%), Query Frame = 2
Query:  104 VNFLEWKREGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLA-LCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 598
            V+FLEWK++ GHR+  +++ YH+  R+DY KY+ +CG +++L N L  + P DPFR +   +LL+KLY MGV+ ++  ++ L + ++VS+ CRRRL  I+ RLK AE +++AV +IEQGH+RVGP  + DPA+LVTRNMED++TWVD SKIK+ +L Y +++DD+D
Sbjct:   16 VDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181          
BLAST of FC925418 vs. ExPASy Swiss-Prot
Match: IMP3_SCHPO (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe GN=imp3 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.921e-47
Identity = 81/169 (47.93%), Postives = 130/169 (76.92%), Query Frame = 2
Query:  104 VNFLEWKRE-GGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDH-LSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYDAM 604
            V+FL +K +   HR+ M+++RYH++ R++Y+KY+ +CG  ++L + L  +DP DPFR++  ++LLEKL++MG++PS+  ++  ++  +VS+ CRRRL  I+ +L+ ++ + EA   IEQGH+RVGP  +TDPA+LVTR++EDF+TW DTSKIKR + +YNDK+DDYD +
Sbjct:   15 VDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDYDLL 183          
BLAST of FC925418 vs. ExPASy Swiss-Prot
Match: YS4L_PNECA (Putative 40S ribosomal protein S4-like (Fragment) OS=Pneumocystis carinii GN=RBP PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.167e-36
Identity = 72/153 (47.06%), Postives = 107/153 (69.93%), Query Frame = 2
Query:  107 NFLEWKRE-GGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDH-LSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKR 559
            +FL +K++   HR+  +++RYH+  R+DY KY+ L G++  + N L  ++P D F      MLL KL++M ++ S   L+  ++ L+VS+FCRRRL  ++ RLK  E +  +V Y+E GH+RVGPE +TDPAF VTRNMEDF+TWVD+SKI+R
Sbjct:   16 DFLNYKKDDNNHRDVNVIRRYHIPQREDYFKYNQLVGLLLGIANKLSLLEPTDSFGNLHKKMLLGKLFDMALLTSTPKLSDVENKLTVSAFCRRRLPVVMCRLKMCETVSTSVKYVEHGHVRVGPEVITDPAFFVTRNMEDFVTWVDSSKIRR 168          
BLAST of FC925418 vs. ExPASy Swiss-Prot
Match: YS4L_CAEEL (Putative 40S ribosomal protein S4-like OS=Caenorhabditis elegans GN=C48B6.2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.934e-31
Identity = 60/167 (35.93%), Postives = 107/167 (64.07%), Query Frame = 2
Query:  107 NFLEWKREGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYDAMN 607
            +F+ W+ +   ++  +L++++V  R+ Y  Y++L    +++ +++K +   DPFR + T+ +L K Y  G++P+  +L     ++ +SF RRRL  ++  +   E +K A   +EQGH+R+G + VTDPAF+VTR+ ED ITW   SKIK+ V++YN+  DD+D M+
Sbjct:   17 DFMSWQVDQQGKQGDMLRKFYVKKREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGKVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASKIKKHVMDYNNTRDDFDLMD 183          
The following BLAST results are available for this feature:
BLAST of FC925418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
IMP3_MOUSE3.120e-4954.22U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_BOVIN2.023e-4853.01U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_HUMAN3.450e-4853.01U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_YEAST7.686e-4850.00U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_SCHPO2.921e-4747.93U3 small nucleolar ribonucleoprotein protein imp3 ... [more]
YS4L_PNECA5.167e-3647.06Putative 40S ribosomal protein S4-like (Fragment) ... [more]
YS4L_CAEEL2.934e-3135.93Putative 40S ribosomal protein S4-like OS=Caenorha... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YJ04FM1 TF Citrus clementina cDNA clone KN0AAP8YJ04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925418 ID=FC925418; Name=FC925418; organism=Citrus clementina; type=EST; length=764bp
TCTCTCTTCATTTAATTTTCTTAAAATTTAGCAGCATCGTTTACTAAAGC
AAAGAATCATAATGAGGAAGCTAAAGTTCCATGAGAAGAAGTTGTTAAAA
AAAGTCAATTTTTTAGAATGGAAAAGAGAAGGTGGCCACAGGGAAGCCAT
GATATTGCAGCGGTACCACGTCACCGGCCGCGACGATTACAAGAAGTATT
CAAGTTTGTGCGGGATGGTGCAGAAGCTGGTTAATATATTGAAGCAGATG
GATCCAAGAGACCCTTTTCGTATTGAGATGACTGATATGCTTCTCGAGAA
GCTATATAACATGGGTGTAATACCAAGCAGGAAAAGCTTGGCTTTGTGTG
ATCATCTATCAGTTTCATCCTTCTGTAGACGCAGGCTTGCCACCATTTTG
GTGCGGTTGAAGTTTGCTGAGCACCTGAAAGAAGCTGTGACATATATTGA
ACAGGGACACATTCGAGTCGGACCGGAGACAGTTACAGACCCTGCATTCC
TCGTGACCAGGAATATGGAAGACTTTATTACATGGGTAGATACATCCAAG
ATAAAGAGAAAGGTCTTGGAATACAATGATAAGGTGGATGATTATGATGC
AATGAACTGAAGACCCATTAAGATCTGTGTTTTCTTTTGTTTCTGAACAT
TTTTGTTTGAATTTCATGTTGTAGGATGTTCATATGGGCAATTAAAAGTT
ATCTTCTTGTCAATTCTCTGTTGCCAGAAATAGTGAGCATCCCAGTAGCA
TTCCCAAAAAAAGT
back to top