FC925427

Overview
NameFC925427
Unique NameFC925427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925427_ssr88 microsatellite FC925427_ssr88:88..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12581 contig Ccv1_Contig12581:199..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_BURXL (Bifunctional purine biosynthesis protein purH OS=Burkholderia xenovorans (strain LB400) GN=purH PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.353e-50
Identity = 105/190 (55.26%), Postives = 129/190 (67.89%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQDDQQFRR--KLAWKAFQHVASYDSAVSEWL 675
            KQALIS+SDK  +      L +LG  I+STGGTA  L + G+SVT+V   T FPEMLDGRVKTLHP +HGGILARRD   HM AL +H I T DL+VVNLYPF   V S      ED IENIDIGGP M+R+AAKNH+DV VVVD  DY  +L+ ++ N +   ++   +LA K F H A YD A++ +L
Sbjct:    3 KQALISVSDKSGIVDFAKSLSDLGVRILSTGGTAKLLADAGLSVTEVADYTGFPEMLDGRVKTLHPKVHGGILARRDLPEHMAALEKHDIPTIDLLVVNLYPFVQTV-SKEECSLEDAIENIDIGGPTMLRSAAKNHRDVTVVVDPADYAVVLDEMRANSNAVSYKTNFRLATKVFAHTAQYDGAITNYL 191          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_BURPP (Bifunctional purine biosynthesis protein purH OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=purH PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.353e-50
Identity = 105/190 (55.26%), Postives = 129/190 (67.89%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQDDQQFRR--KLAWKAFQHVASYDSAVSEWL 675
            KQALIS+SDK  +      L +LG  I+STGGTA  L + G+SVT+V   T FPEMLDGRVKTLHP +HGGILARRD   HM AL +H I T DL+VVNLYPF   V S      ED IENIDIGGP M+R+AAKNH+DV VVVD  DY  +L+ ++ N +   ++   +LA K F H A YD A++ +L
Sbjct:    3 KQALISVSDKSGIVDFAKSLSDLGVKILSTGGTAKLLADAGLSVTEVADYTGFPEMLDGRVKTLHPKVHGGILARRDLPEHMAALEKHDIPTIDLLVVNLYPFVQTV-SKEECSLEDAIENIDIGGPTMLRSAAKNHRDVTVVVDPADYAVVLDEMRANSNAVSYKTNFRLATKVFAHTAQYDGAITNYL 191          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_HERAR (Bifunctional purine biosynthesis protein purH OS=Herminiimonas arsenicoxydans GN=purH PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.714e-50
Identity = 104/189 (55.03%), Postives = 126/189 (66.67%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQDDQQFRRK--LAWKAFQHVASYDSAVSEW 672
            KQALIS+SDK  +      L  +G  I+STGGTA  L  +G+SVT+V   T FPEMLDGRVKTLHP +HGGILARRD   H+ ALS+H I T D+VVVNLYPF   V  A     ED IENIDIGGPAM+R++AKNHKDV+V+ D  DY  +L  L  N  +  +  K  LA K F H A YD A++ +
Sbjct:    3 KQALISVSDKTGVLDFARALSAMGVNILSTGGTAKLLAENGISVTEVADYTGFPEMLDGRVKTLHPKVHGGILARRDFPEHVAALSKHDIPTIDMVVVNLYPFQQTVARA-ECSLEDAIENIDIGGPAMLRSSAKNHKDVIVICDPSDYSLVLHELNTNNGEATYETKFALAKKVFAHTAQYDGAITNY 190          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_POLNS (Bifunctional purine biosynthesis protein purH OS=Polynucleobacter necessarius (strain STIR1) GN=purH PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.769e-50
Identity = 98/190 (51.58%), Postives = 128/190 (67.37%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQDDQQFRRKLAW--KAFQHVASYDSAVSEWL 675
            + AL+S+SDK  +      L E G  ++STGGTA  L  +G+ V ++  LT FPEMLDGRVKTLHP +HGG+LARRD   HM AL E+GI T D++V+NLYPF + V       FED +ENIDIGGPAM+RAAAKNH+DV V++  EDY  +L  +K NQ+   ++  LA   K F H A YD A++ +L
Sbjct:    3 RTALLSVSDKNGIVPFAKSLHEQGIKLISTGGTAKLLAENGLPVVEISSLTKFPEMLDGRVKTLHPMVHGGLLARRDFPEHMAALKEYGINTIDMLVINLYPFNETVAKE-NCSFEDAVENIDIGGPAMLRAAAKNHQDVTVLISPEDYAPVLAEMKANQNSVSYKTNLALAKKVFAHTAQYDGAIANYL 191          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_SYNWW (Bifunctional purine biosynthesis protein purH OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=purH PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.496e-49
Identity = 105/189 (55.56%), Postives = 135/189 (71.43%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFL-KGNQDDQQFRRKLAWKAFQHVASYDSAVSEWL 675
            K+ALIS+S+K+ L     GL++LGY I+STGGT  +++  G+ V KV  +T FPE+LDGRVKTLHP IHGGILARR  + H+  L E+ IG  D+V VNLYPF + + S  G+  E+ IENIDIGGPAM+RAAAKN++DV VVV  E Y ALLE L K      +FR KLA +AF H A+YD+ +S +L
Sbjct:    2 KRALISVSNKEGLLDFARGLEKLGYEIISTGGTYNTIKEAGIKVKKVADITGFPEILDGRVKTLHPKIHGGILARRIPE-HLQQLQENDIGPIDIVAVNLYPFRETI-SRPGVSLEEAIENIDIGGPAMVRAAAKNYQDVAVVVKPEFYQALLEALEKPGGISPEFRLKLALEAFSHTAAYDAMISSYL 188          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_JANMA (Bifunctional purine biosynthesis protein purH OS=Janthinobacterium sp. (strain Marseille) GN=purH PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.496e-49
Identity = 103/189 (54.50%), Postives = 126/189 (66.67%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQDDQQFRRK--LAWKAFQHVASYDSAVSEW 672
            KQALIS+SDK  +      L  +G  I+STGGTA  L  +G+SVT+V   T FPEMLDGRVKTLHP +HGGILARRD   H+ AL +H I T D+VVVNLYPF   V +      ED IENIDIGGPAM+R++AKNHKDV+V+ D  DY  +L  L  NQ +  +  K  LA K F H A YD A++ +
Sbjct:    3 KQALISVSDKTGVLEFARALSGMGVNILSTGGTAKLLAENGISVTEVADYTGFPEMLDGRVKTLHPKVHGGILARRDFAEHVSALEKHNIPTIDMVVVNLYPFQQTV-AREHCSLEDAIENIDIGGPAMLRSSAKNHKDVIVICDPTDYSQVLGELSANQGEVSYETKFTLAKKVFAHTAQYDGAITNY 190          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_BURP8 (Bifunctional purine biosynthesis protein purH OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=purH PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.496e-49
Identity = 104/190 (54.74%), Postives = 128/190 (67.37%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQDDQQFRR--KLAWKAFQHVASYDSAVSEWL 675
            KQALIS+SDK  +      L +LG  I+STGGTA  L + G+ VT+V   T FPEMLDGRVKTLHP +HGGILARRD   HM AL +H I T DL+VVNLYPF   V S      ED IENIDIGGP M+R+AAKNH+DV VVVD  DY  +L+ ++ N +   ++   +LA K F H A YD A++ +L
Sbjct:    3 KQALISVSDKSGIVDFAKSLSDLGVKILSTGGTAKLLADAGLPVTEVADYTGFPEMLDGRVKTLHPKVHGGILARRDLPEHMAALEKHDIPTIDLLVVNLYPFVQTV-SKEECTLEDAIENIDIGGPTMLRSAAKNHRDVTVVVDPADYATVLDEMRANGNTVGYKTNFRLATKVFAHTAQYDGAITNYL 191          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_BRAJA (Bifunctional purine biosynthesis protein purH OS=Bradyrhizobium japonicum GN=purH PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.954e-49
Identity = 104/188 (55.32%), Postives = 129/188 (68.62%), Query Frame = 1
Query:  115 QALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQ--DDQQFRRKLAWKAFQHVASYDSAVSEW 672
            +AL+S+SDK  L      L      +VSTGGTA ++   G+ V  V +LT FPEM+DGRVKTLHP +HGG+LA RD K H DA+  HGI   DL+VVNLYPF  + T   G  FED IENIDIGGPAMIRAAAKNH DV VVV++EDY A+L+ L  N+     + RR+LA KA+   A+YD+A+S W
Sbjct:   10 RALLSVSDKTGLIEFAKALAAHDVELVSTGGTAKAIAAAGLKVKDVSELTGFPEMMDGRVKTLHPKVHGGLLAIRDNKDHADAMKAHGIAPIDLLVVNLYPF--EATVDKGAGFEDCIENIDIGGPAMIRAAAKNHDDVAVVVEAEDYKAVLDELAANKGATTLKLRRRLAAKAYARTAAYDAAISNW 195          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_SILPO (Bifunctional purine biosynthesis protein purH OS=Silicibacter pomeroyi GN=purH PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.552e-49
Identity = 103/190 (54.21%), Postives = 133/190 (70.00%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGN--QDDQQFRRKLAWKAFQHVASYDSAVSEWL 675
            ++AL+S+SDK  L  LG  L   G  ++STGGTA +L + G++V  V ++T FPEM+DGRVKTLHP +HGG+LA RD   H+ A+ +HGI   DL+VVNLYPF  + T A G D++D IENIDIGGPAMIRAA+KNH  V VVVD  DY ALL  +  N  Q    FR++LA  A+   A+YD+AVS W+
Sbjct:    8 RRALLSVSDKTGLIELGQALAARGVELLSTGGTAKALRDAGLTVRDVAEVTGFPEMMDGRVKTLHPMVHGGLLALRDNADHVAAMEQHGIAGIDLLVVNLYPF--EATVAKGADYDDCIENIDIGGPAMIRAASKNHAFVNVVVDVADYDALLAEMAANDGQTSYAFRQRLAQTAYARTAAYDAAVSNWM 195          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_BURCA (Bifunctional purine biosynthesis protein purH OS=Burkholderia cenocepacia (strain AU 1054) GN=purH PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.332e-49
Identity = 103/190 (54.21%), Postives = 126/190 (66.32%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLK--GNQDDQQFRRKLAWKAFQHVASYDSAVSEWL 675
            KQALIS+SDK  +      L +LG  ++STGGTA  L + G+ VT+V   T FPEMLDGRVKTLHP +HGGILARRD   HM AL +HGI T DL+VVNLYPF   + +       D IENIDIGGP M+R+AAKNH+DV VVVD  DY  +L+ +K  GN        +LA K F H A YD A++ +L
Sbjct:    3 KQALISVSDKTGIVDFAKSLSDLGVKLLSTGGTAKLLADAGLPVTEVADYTGFPEMLDGRVKTLHPKVHGGILARRDLPEHMQALEQHGIPTIDLLVVNLYPFVATI-AKDDCTLADAIENIDIGGPTMLRSAAKNHRDVTVVVDPADYAVVLDEMKANGNTVGHPTNFRLATKVFAHTAQYDGAITNYL 191          
The following BLAST results are available for this feature:
BLAST of FC925427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 468
Match NameE-valueIdentityDescription
PUR9_BURXL1.353e-5055.26Bifunctional purine biosynthesis protein purH OS=B... [more]
PUR9_BURPP1.353e-5055.26Bifunctional purine biosynthesis protein purH OS=B... [more]
PUR9_HERAR6.714e-5055.03Bifunctional purine biosynthesis protein purH OS=H... [more]
PUR9_POLNS8.769e-5051.58Bifunctional purine biosynthesis protein purH OS=P... [more]
PUR9_SYNWW1.496e-4955.56Bifunctional purine biosynthesis protein purH OS=S... [more]
PUR9_JANMA1.496e-4954.50Bifunctional purine biosynthesis protein purH OS=J... [more]
PUR9_BURP81.496e-4954.74Bifunctional purine biosynthesis protein purH OS=B... [more]
PUR9_BRAJA1.954e-4955.32Bifunctional purine biosynthesis protein purH OS=B... [more]
PUR9_SILPO2.552e-4954.21Bifunctional purine biosynthesis protein purH OS=S... [more]
PUR9_BURCA3.332e-4954.21Bifunctional purine biosynthesis protein purH OS=B... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE08FM1 TF Citrus clementina cDNA clone KN0AAP11YE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925427 ID=FC925427; Name=FC925427; organism=Citrus clementina; type=EST; length=681bp
CACACTACCTCTCTGCGCTCCAGTTACTCTCCTATCAGAGCCATGGCCCA
CTCTCACACCGTTTCTGTTCCAACCAATCAACCCCCGTCCTCCTCCTCCT
CTCAAGCGAATAAGCAGGCATTGATTTCTTTGTCGGATAAAAAGGATTTG
GCATCTCTTGGAATTGGGTTACAAGAACTGGGGTACACAATTGTTTCCAC
CGGAGGAACAGCTACTTCTCTAGAAAATGATGGGGTGTCTGTGACTAAAG
TGGAGCAGCTCACCTGTTTCCCGGAAATGCTGGATGGCCGTGTAAAAACT
TTGCACCCCAACATTCACGGAGGTATTCTTGCCAGAAGAGACCAAAAGCA
TCATATGGATGCTCTCAGTGAGCATGGAATTGGTACATTTGATCTAGTAG
TAGTGAACTTGTACCCCTTCTATGATAAAGTTACTTCTGCTGGAGGGATT
GATTTTGAGGATGGAATTGAGAACATTGATATTGGGGGCCCTGCCATGAT
CAGAGCTGCTGCAAAGAACCACAAGGATGTGCTGGTTGTAGTTGACTCGG
AAGATTATCCTGCCCTCCTAGAATTTCTTAAAGGAAACCAGGATGATCAA
CAGTTTCGTAGAAAACTTGCTTGGAAAGCGTTTCAACATGTTGCTTCATA
TGATTCTGCAGTGTCAGAGTGGCTGTGGAAA
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