FC925428

Overview
NameFC925428
Unique NameFC925428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925428_ssr402 microsatellite FC925428_ssr402:402..413. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12442 contig Ccv1_Contig12442:59..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.614e-46
Identity = 89/155 (57.42%), Postives = 100/155 (64.52%), Query Frame = 1
Query:  112 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576
            MS R SRT+YVGNLP DIRE EVEDLF KYG ++ I+LK+PPRPP Y FVEF++ARDAEDAI GRDGY+FDG RLRVELAH                                          SE+RV+V GLPSSASWQDLKDHMRK GDVCF+
Sbjct:    1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAH-------GGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFS 148          

HSP 2 Score: 37.3502 bits (85), Expect = 1.614e-46
Identity = 17/27 (62.96%), Postives = 20/27 (74.07%), Query Frame = 2
Query:  578 EVSRDSEGTYGVVDYTNPEDMKYGIPK 658
            +V RD+ GT GVVDYT  EDMKY + K
Sbjct:  149 QVYRDARGTTGVVDYTCYEDMKYALKK 175          
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.117e-31
Identity = 74/147 (50.34%), Postives = 84/147 (57.14%), Query Frame = 1
Query:  136 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576
            IYVGNLP DIR  +VED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SEYRVIV GLP S SWQDLKDHMR+AGDVC+A
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYA 149          
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.191e-30
Identity = 73/147 (49.66%), Postives = 84/147 (57.14%), Query Frame = 1
Query:  136 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SEYRVIV GLP S SWQDLKDHMR+AGDVC+A
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYA 150          
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.525e-30
Identity = 73/147 (49.66%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  136 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576
            IYVGNLP DIR  +VED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+  RDGY++DG RLRVE                                             SEYRVIV GLP S SWQDLKDHMR+AGDVC+A
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPR----SGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYA 159          
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.910e-30
Identity = 72/152 (47.37%), Postives = 84/152 (55.26%), Query Frame = 1
Query:  136 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                  SEYRV+V GLP S SWQDLKDHMR+AGDVC+A
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYA 169          
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29
Identity = 71/147 (48.30%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  136 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SE RV+V GLP S SWQDLKDHMR+AGDVC+A
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYA 150          
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29
Identity = 71/147 (48.30%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  136 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SE RV+V GLP S SWQDLKDHMR+AGDVC+A
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYA 150          
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29
Identity = 71/147 (48.30%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  136 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SE RV+V GLP S SWQDLKDHMR+AGDVC+A
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYA 150          
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29
Identity = 71/147 (48.30%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  136 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SE RV+V GLP S SWQDLKDHMR+AGDVC+A
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYA 150          
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29
Identity = 71/147 (48.30%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  136 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SE RV+V GLP S SWQDLKDHMR+AGDVC+A
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYA 150          
The following BLAST results are available for this feature:
BLAST of FC925428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SFRS1_ARATH1.614e-4657.42Pre-mRNA-splicing factor SF2 OS=Arabidopsis thalia... [more]
SFR1B_DANRE9.117e-3150.34Splicing factor, arginine/serine-rich 1B OS=Danio ... [more]
SFRS1_CHICK1.191e-3049.66Splicing factor, arginine/serine-rich 1 OS=Gallus ... [more]
SFR1A_DANRE4.525e-3049.66Splicing factor, arginine/serine-rich 1A OS=Danio ... [more]
SFRS1_XENTR5.910e-3047.37Splicing factor, arginine/serine-rich 1 OS=Xenopus... [more]
SFRS1_PONAB1.719e-2948.30Splicing factor, arginine/serine-rich 1 OS=Pongo a... [more]
SFRS1_PIG1.719e-2948.30Splicing factor, arginine/serine-rich 1 OS=Sus scr... [more]
SFRS1_MOUSE1.719e-2948.30Splicing factor, arginine/serine-rich 1 OS=Mus mus... [more]
SFRS1_HUMAN1.719e-2948.30Splicing factor, arginine/serine-rich 1 OS=Homo sa... [more]
SFRS1_BOVIN1.719e-2948.30Splicing factor, arginine/serine-rich 1 OS=Bos tau... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE09FM1 TF Citrus clementina cDNA clone KN0AAP11YE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925428 ID=FC925428; Name=FC925428; organism=Citrus clementina; type=EST; length=683bp
TCGGAAGCTTTGGTCGTTTTCGGTAAGGACCGGCGGGTCGTCACGTGGTG
GTTCAGCGACGCTTCTCCTGCTCATAAATCTTGTGAAATTTTATAGTCCT
TACCATCAGAAATGAGTGGTCGTTTTTCTCGTACAATCTATGTTGGCAAC
CTGCCCTCTGATATAAGAGAATATGAAGTTGAGGATCTCTTTTACAAGTA
TGGCCGTATATTGGATATTGAATTAAAGATCCCCCCTCGCCCGCCATGTT
ATTGTTTTGTTGAGTTTGAGAATGCTCGTGATGCCGAAGATGCTATTAGA
GGTCGTGATGGCTATAACTTTGATGGTTGTCGTTTAAGGGTTGAGCTCGC
CCATGGTGGTAGTGGTAGAGGTCCATCATCAAGTGATCGTCGTGGTGGCT
ATGGTGGTGGTGGTGCTGGTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCT
GGTGCTGGTCGTTTTGGCATCTCACGCCATTCTGAATATCGAGTTATTGT
CCGCGGGCTTCCTTCTTCAGCTTCCTGGCAGGATTTAAAGGATCATATGC
GAAAAGCAGGCGATGTTTGTTTTGCCTGAAGTTTCCCGTGATAGTGAGGG
GACTTATGGGGTCGTTGATTATACTAATCCTGAAGACATGAAATATGGCA
TTCCGAAAACTTGATGACACTGAATTTAAAAAT
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