FC925431

Overview
NameFC925431
Unique NameFC925431
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14215 contig Ccv1_Contig14215:77..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.769e-66
Identity = 126/223 (56.50%), Postives = 166/223 (74.44%), Query Frame = 3
Query:   99 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLKWLRSITN 758
            E  N+NE++ +A+  LPKM YD+YA GAED+ TL EN  AF RI FRPRIL+DV+ ID++TTIL +KIS PI+IAPTA  K+A+PEGE ATARAA++  TIM LS  ++S++EEVA++   +RF+QLYV+K R++ A LV+RAER GFKA+ LT DTPRLGRREADIKN+ + PP   LKN EG+   K+     S   +     +D SLSWKD+ WL++IT+
Sbjct:    2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITS 224          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 8.908e-65
Identity = 121/223 (54.26%), Postives = 165/223 (73.99%), Query Frame = 3
Query:   99 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLKWLRSITN 758
            E  N+ E+  +A+  LPKM YD+YA GAED+ TL+EN  AF RI FRPRIL+DV++ID++TT+L +KIS PI++APTAF K+A+P+GE ATARAA++  TIM LS  ++S++EEVA++   +RF+QLYV+K R +   LV+RAE+ GFKA+ LT DTPRLGRRE+DIKN+   PP   LKN EGL   K+     S   +     +D +LSWKD++WL++ITN
Sbjct:    2 EITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMATTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRKVVEQLVRRAEKAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDIQWLQTITN 224          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.421e-64
Identity = 121/222 (54.50%), Postives = 164/222 (73.87%), Query Frame = 3
Query:   99 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLKWLRSIT 755
            E  N+ E+  +A+  LPKM YD+YA GAED+ TL+EN  AF RI FRPRIL+DVS+ID++TT+L +KIS PI++APTA  K+A+P+GE ATARAA++  TIM LS  ++S++EEVA++   +RF+QLYV+K R++   LV+RAER GFKA+ LT DTPRLGRRE+DIKN+   PP   LKN EGL   K+     S   +     +D +LSWKD++WL++IT
Sbjct:    2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTIT 223          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.003e-45
Identity = 91/223 (40.81%), Postives = 145/223 (65.02%), Query Frame = 3
Query:  111 LNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA-ASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADAN------ETMDASLSWKDLKWLRSITN 758
            +N++++ A+  LPK  YD+Y  GA DE TL +N+ AF R    PR+L +V+  DLST++L  ++S PI +  TA  ++A+ +GE+AT RA  S  T M+LS  ++S+IEEVA A   A+R+ QLY++K R++T  LV++AE+ G+KA+ +T DTP LG R  D++N+   PP   ++   ++ +S     NF  D+       + +D S+SW+D+KWLR +T+
Sbjct:    8 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTS 230          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.294e-43
Identity = 101/225 (44.89%), Postives = 140/225 (62.22%), Query Frame = 3
Query:  105 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNA-VRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP---PLKNLEGLLSTKVSSDTGSNFEADANE----TMDASLSWKDLKWLRSIT 755
            V+++E  E A+  LPKM YD+YA G+ D+ TL EN  AF RI   PR LVDVS+++  T I    IS PI+IAP A  ++A+  GE+ T  A+   NTIM LS  S++++E++++++N    ++QLYVFK R ++  LV+RAE  G+ ALVLT DTP LG+R AD KN    P    LK  E L+         SN +   N+     +D SL+W DLKWL+SIT
Sbjct:   32 VSVSELHEEAKRLLPKMAYDYYASGSNDQITLAENENAFSRIKLVPRSLVDVSKVNTKTRIFGRDISTPILIAPWAMQRMASQRGELDTVEASKEFNTIMTLSSLSTTSVEDLSSATNGNPGWFQLYVFKDRKVSEELVKRAESIGYSALVLTVDTPFLGKRTADFKNSFKLPNGLSLKIFEKLML--------SNLDGGLNQYIATMIDPSLTWNDLKWLKSIT 248          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.360e-41
Identity = 91/225 (40.44%), Postives = 141/225 (62.67%), Query Frame = 3
Query:  105 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA-ASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEG---LLSTKVSSDTGSNFEADANETMDASLSWKDLKWLRSITN 758
            V ++++++  R  L K  YD+Y  GA D+ TL +N++AF R    PR+L +V+ IDLST++L  ++S PI +  TA   +A+ +GE+AT RA  +  T M+LS  ++S+IEEVA A   A+R+ QLY++K R+I+  +V+RAE+ G+KA+ +T DTP LG R  D++N+   PP   +KN E      S K +    S       + +D SLSW D+ WLR +T+
Sbjct:    6 VCISDYEQHVRSVLQKSVYDYYRSGANDQETLADNIQAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPEALRWMQLYIYKDREISRQIVKRAEKQGYKAIFVTVDTPYLGNRIDDVRNRFKLPPQLRMKNFETNDLAFSPKGNFGDNSGLAEYVAQAIDPSLSWDDITWLRRLTS 230          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.409e-40
Identity = 95/218 (43.58%), Postives = 136/218 (62.39%), Query Frame = 3
Query:  105 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEE-VAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLKWLRSIT 755
            V L +F+E AR  L K  +DF  GGA+D  T  EN+ AF +I  RPR L DVS++D+ TTI   +ISAPI IAPT FH+LA P+GE++TARAA + +   + S  +S ++E+ VAA+   +R++QLYV   R I   ++Q+ E  GFKALV+T D P++G R  DI N++    +K L  LL    S + G+         +D S+ W+DL W +S+T
Sbjct:    4 VCLTDFREHAREHLSKSTWDFIEGGADDCCTRDENMAAFKKIRLRPRYLKDVSKVDMRTTIQGAEISAPICIAPTGFHRLAWPDGEMSTARAAQAASICYITSTYASCSLEDIVAAAPRGLRWFQLYVHPNRQINKQMIQKVESLGFKALVITVDVPKVGNRRNDITNQV--DLMKKL--LLKDLGSPEMGNVMPYFQMSPIDPSICWEDLSWFQSMT 217          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 7.858e-37
Identity = 96/221 (43.44%), Postives = 128/221 (57.92%), Query Frame = 3
Query:  105 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEE-VAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLKWLRSIT 755
            V L +F+  A+  L K  +DF  G A+D  T  EN+ AF RI  RPR L D+S++D  TTI   +ISAPI I+PTAFH +A P+GE +TARAA   N   V+S  +S ++E+ VAA+    R++QLY+    D    +VQRAE  GFKALV+T DTP LG R  D +N++       LK+L  L   K +     +F         AS  W DL  L+SIT
Sbjct:    4 VCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFP-------KASFCWNDLSLLQSIT 217          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.026e-36
Identity = 94/218 (43.12%), Postives = 124/218 (56.88%), Query Frame = 3
Query:  105 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEE-VAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLKWLRSIT 755
            V L +FQ  AR  L K   DF  GGA+D  T  +N+ AF RI  RPR L DVS +D  TTI   +ISAPI IAPT FH L  P+GE++TARAA +     + S  +S ++E+ V A+   +R++QLYV     +   L+QR E  GFKALV+T DTP  G R  DI+N++     +NL   L+   S   G+         +  SL W DL W +SIT
Sbjct:    4 VCLTDFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDTRTTIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAAPEGLRWFQLYVHPDLQLNKQLIQRVESLGFKALVITLDTPVCGNRRHDIRNQL----RRNL--TLTDLQSPKKGNAIPYFQMTPISTSLCWNDLSWFQSIT 215          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: CYB2_HANAN (Cytochrome b2, mitochondrial OS=Hansenula anomala GN=CYB2 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.286e-36
Identity = 86/222 (38.74%), Postives = 127/222 (57.21%), Query Frame = 3
Query:   96 AEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAAS--SNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLKWLRSIT 755
            ++ +NL++F+ +AR  LP     +Y   A+DE TL+EN  A+HRI F P+IL+DV  +D+ST     K SAP  I+ TA  KL +PEGEVA A+ A   + + ++S  +S + +E+A +      ++YQLYV   R IT   V+ AE  G K L +T D P LGRRE D+K K       +++G        D         +  +D SLSWKD+ +++SIT
Sbjct:  185 SQMINLHDFETIARQILPPPALAYYCSAADDEVTLRENHNAYHRIFFNPKILIDVKDVDISTEFFGEKTSAPFYISATALAKLGHPEGEVAIAKGAGREDVVQMISTLASCSFDEIADARIPGQQQWYQLYVNADRSITEKAVRHAEERGMKGLFITVDAPSLGRREKDMKMKFEAD--SDVQG---DDEDIDRSQGASRALSSFIDPSLSWKDIAFIKSIT 401          
The following BLAST results are available for this feature:
BLAST of FC925431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
GOX_SPIOL2.769e-6656.50Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
GOX1_ARATH8.908e-6554.26Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
GOX2_ARATH4.421e-6454.50Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
HAOX1_HUMAN6.003e-4540.81Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX_DICDI3.294e-4344.89Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
HAOX1_MOUSE2.360e-4140.44Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX2_BOVIN3.409e-4043.58Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
HAOX2_RAT7.858e-3743.44Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]
HAOX2_HUMAN1.026e-3643.12Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]
CYB2_HANAN2.286e-3638.74Cytochrome b2, mitochondrial OS=Hansenula anomala ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE10FM1 TF Citrus clementina cDNA clone KN0AAP11YE10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925431 ID=FC925431; Name=FC925431; organism=Citrus clementina; type=EST; length=758bp
TTGACTTTAACTCTTCCCCCGACTCACTGTTGTAATCTGCTTCACGATCG
ACCTTCATCAGTTGAAATTTTTAGTCATTCGGGTTTCACATGGCAGCTGA
ACCTGTTAATTTGAATGAGTTCCAAGAATTGGCAAGGCTGGCCCTTCCAA
AAATGTATTATGATTTCTACGCTGGTGGAGCAGAAGATGAACATACCCTA
AAAGAGAATGTGGAAGCCTTTCATAGAATTACGTTTCGGCCAAGAATTCT
TGTCGATGTCAGCAGAATAGATTTATCGACTACTATACTTGATTACAAAA
TCTCGGCTCCCATTATCATTGCTCCAACGGCTTTCCATAAGCTTGCAAAC
CCTGAAGGAGAAGTAGCCACAGCCAGAGCAGCAGCTTCATGTAACACCAT
AATGGTTTTATCCTTCACATCTAGCAGCACCATAGAGGAGGTTGCGGCCA
GCTCCAATGCTGTTCGCTTCTATCAATTATATGTATTCAAGAAACGAGAT
ATAACAGCTACTCTAGTGCAGAGAGCTGAAAGGAATGGTTTTAAGGCTCT
TGTCCTAACTGCTGATACTCCAAGACTTGGTAGAAGGGAGGCAGATATAA
AGAACAAAATGATTACACCGCCGTTGAAGAATTTGGAAGGCCTCTTATCA
ACCAAAGTCAGCTCTGATACAGGTTCGAATTTTGAAGCTGATGCCAATGA
GACCATGGATGCTTCTTTAAGTTGGAAGGATTTAAAATGGCTAAGATCTA
TTACAAAC
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