FC925435

Overview
NameFC925435
Unique NameFC925435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9354 contig Ccv1_Contig9354:20..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK40_ARATH (Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.261e-49
Identity = 100/179 (55.87%), Postives = 125/179 (69.83%), Query Frame = 3
Query:  252 TGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNKNT---ENEVGISKKRKAESEDH---CHTIGFNVHAXXXXXXXXXXXCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT 770
            T  LVEELNR+S ENKKL+EML+++C NYN LR+Q M+ +NK+     +++   KKRK+ + +    C  IG  V              K+ ++   K KVSR Y +   S++TL+VKDGYQWRKYGQKVTRDNPSPRAYFKC+ APSC VKKKVQRS ED S+LVATYEGEHNHP P+
Sbjct:   30 TSALVEELNRVSAENKKLSEMLTLMCDNYNVLRKQLMEYVNKSNITERDQISPPKKRKSPAREDAFSCAVIG-GVSESSSTDQDEYLCKKQREETVVKEKVSRVYYKTEASDTTLVVKDGYQWRKYGQKVTRDNPSPRAYFKCACAPSCSVKKKVQRSVEDQSVLVATYEGEHNHPMPS 207          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK18_ARATH (WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.418e-44
Identity = 102/230 (44.35%), Postives = 137/230 (59.57%), Query Frame = 3
Query:  174 SSEVPKREFKGDHFAEFEERASVKQETGI-LVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNKNT----ENEVGISKKRK--------------------AESEDHCHTIGFNVHAXXXXXXXXXXXCKRP-KDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKAE 785
            S+++PK+E         + +   + E+   L EELNR+++ENKKL EML+ +C++YN L      L ++ +    + ++ I K+++                    + +EDH H      H            CKRP  D+  KAKVS  YV    S+++L VKDG+QWRKYGQKVTRDNPSPRAYF+CSFAPSCPVKKKVQRSAEDPS+LVATYEG HNH  P  S+ +
Sbjct:   19 SAKLPKKEVSVLASTHLKRKWLEQDESASELREELNRVNSENKKLTEMLARVCESYNELHNHLEKLQSRQSPEIEQTDIPIKKRKQDPDEFLGFPIGLSSGKTENSSSNEDHHH------HHQQHEQKNQLLSCKRPVTDSFNKAKVSTVYVPTETSDTSLTVKDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNHLGPNASEGD 242          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK60_ARATH (Probable WRKY transcription factor 60 OS=Arabidopsis thaliana GN=WRKY60 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.468e-41
Identity = 97/207 (46.86%), Postives = 128/207 (61.84%), Query Frame = 3
Query:  174 SSEVPKREFKGDHFAEFEERASVKQET-GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNKNTENEVG-----ISKKRKAESEDHCHT-IGFNVHAXXXXXXXXXXXCKRPKDN--NTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQP 767
            S ++PKRE         E++  VK E   +L +E+NR+++ENKKL EML+ +C+ Y  L     +L ++ +   V      ++ KRK E ++   + IG ++                P +N  N KA VS  Y  A  S+++L VKDGYQWRKYGQK+TRDNPSPRAYF+CSF+PSC VKKKVQRSAEDPS LVATYEG HNH  P
Sbjct:   15 SGKLPKREVSASASKVVEKKWLVKDEKRNMLQDEINRVNSENKKLTEMLARVCEKYYALNNLMEELQSRKSPESVNFQNKQLTGKRKQELDEFVSSPIGLSLG---------------PIENITNDKATVSTAYFAAEKSDTSLTVKDGYQWRKYGQKITRDNPSPRAYFRCSFSPSCLVKKKVQRSAEDPSFLVATYEGTHNHTGP 206          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.892e-22
Identity = 65/228 (28.51%), Postives = 101/228 (44.30%), Query Frame = 3
Query:  216 AEFEERASVKQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLM------------------------------------------NKNTENEVGISKKRKAESEDHCHTIGFNVHAXXXXXXXXXXXCKRPK--DNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQP 767
            +E E++ + K E   L +EL +++ +N+KL E+L+ +  +Y +L+   + LM                                          N ++E+         AE   +   +G                   P   D   +A + +  V     +   ++ DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR AED SIL+ TYEG HNHP P
Sbjct:  146 SEMEDKRA-KNELVKLQDELKKMTMDNQKLRELLTQVSNSYTSLQMHLVSLMQQQQQQNNKVIEAAEKPEETIVPRQFIDLGPTRAVGEAEDVSNSSSEDRTRSGGSSAAERRSNGKRLGREESPETESNKIQKVNSTTPTTFDQTAEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITTYEGNHNHPLP 372          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRKY9_ARATH (Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.292e-21
Identity = 50/88 (56.82%), Postives = 61/88 (69.32%), Query Frame = 3
Query:  519 NTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKA 782
            N KA+VS   VRA    +T+   DG QWRKYGQK  + NP PRAY++C+ AP CPV+K+VQR  ED SIL+ TYEG HNHP P  + A
Sbjct:  218 NRKARVS---VRARCETATM--NDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATA 300          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.687e-21
Identity = 66/211 (31.28%), Postives = 97/211 (45.97%), Query Frame = 3
Query:  243 KQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQ----------------QYMDLMNKNTENEVGISKKRKAESEDHCHTIGFNVHAXXXXXXXXXXXCKRPKDNNTKA---------------KVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKA 782
            K +   L  EL R+  EN KL  +L  + ++YN+L++                Q+ D+    +   +   + +    E    T+                  K P+ +  K+               + +R  VRA    +T  V DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR AED +IL  TYEG HNHP P  + A
Sbjct:   96 KTQISRLKLELERLHEENHKLKHLLDEVSESYNDLQRRVLLARQTQVEGLHHKQHEDVPQAGSSQALENRRPKDMNHETPATTLKRRSPDDVDGRDMHRGSPKTPRIDQNKSTNHEEQQNPHDQLPYRKARVSVRARSDATT--VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILTTTYEGNHNHPLPPSATA 304          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK61_ARATH (Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.412e-21
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 3
Query:  531 KVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKA 782
            K +R  VR+     T+   DG QWRKYGQK+ + NP PRAY++C+ A SCPV+K+VQR +ED SIL++TYEG HNHP P  + A
Sbjct:  175 KKTRVSVRSRCETPTM--NDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCSEDMSILISTYEGTHNHPLPMSATA 256          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.428e-20
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 3
Query:  525 KAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSKA 782
            KA+VS   VRA   +   ++ DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR AED SIL+ TYEG HNHP P  + A
Sbjct:  282 KARVS---VRAR--SEAAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAATA 362          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.209e-19
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 3
Query:  525 KAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQP 767
            KA+VS   VRA      L   DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR AED +IL+ TYEG HNHP P
Sbjct:  277 KARVS---VRARSEAPML--SDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLP 352          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK72_ARATH (Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.579e-19
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  531 KVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQP 767
            K +R  VRA     T+   DG QWRKYGQK+ + NP PRAY++C+ AP CPV+K+VQR A+D SIL+ TYEG H+H  P
Sbjct:  211 KRARVCVRARCDTPTM--NDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCADDMSILITTYEGTHSHSLP 287          
The following BLAST results are available for this feature:
BLAST of FC925435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
WRK40_ARATH4.261e-4955.87Probable WRKY transcription factor 40 OS=Arabidops... [more]
WRK18_ARATH1.418e-4444.35WRKY transcription factor 18 OS=Arabidopsis thalia... [more]
WRK60_ARATH1.468e-4146.86Probable WRKY transcription factor 60 OS=Arabidops... [more]
WRKY6_ARATH9.892e-2228.51WRKY transcription factor 6 OS=Arabidopsis thalian... [more]
WRKY9_ARATH1.292e-2156.82Probable WRKY transcription factor 9 OS=Arabidopsi... [more]
WRK47_ARATH1.687e-2131.28Probable WRKY transcription factor 47 OS=Arabidops... [more]
WRK61_ARATH6.412e-2154.76Probable WRKY transcription factor 61 OS=Arabidops... [more]
WRK31_ARATH1.428e-2055.81Probable WRKY transcription factor 31 OS=Arabidops... [more]
WRK42_ARATH1.209e-1958.02Probable WRKY transcription factor 42 OS=Arabidops... [more]
WRK72_ARATH1.579e-1955.70Probable WRKY transcription factor 72 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YI02FM1 TF Citrus clementina cDNA clone KN0AAP3YI02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925435 ID=FC925435; Name=FC925435; organism=Citrus clementina; type=EST; length=790bp
CTTAGATTCTCAATTTTTTAACAAGCTATAGGCCTATAGCTCTCTGGTCA
TTTGATCAGATTTGCTCGCATATATTTTCTTTTTCAAGTTCTTGTGTTAG
TTCTACAATTTGGTCAATGGATTCAACGTGGGTGGACACCTCTCTTGACC
TCAATCTCAATCTTCTGAATCACAGTAGTGAAGTTCCGAAGAGAGAGTTT
AAGGGAGATCACTTTGCTGAATTTGAAGAGAGAGCTTCAGTTAAACAAGA
GACTGGAATTTTGGTGGAGGAATTGAATAGGATAAGCACTGAGAACAAGA
AGCTGAATGAAATGCTTTCCATTTTGTGTAAGAATTACAACAATTTGCGG
CAGCAGTACATGGATTTGATGAACAAGAACACAGAAAATGAAGTTGGAAT
ATCAAAGAAGAGGAAGGCTGAGAGTGAAGATCATTGCCACACGATTGGCT
TCAATGTACACGCTACTGAGTCCAGCACTAGTACTGACGAAGAGTCATGC
AAAAGGCCAAAGGATAACAACACCAAGGCAAAAGTTTCTAGGTTTTATGT
GAGAGCCAGTGATTCAAATTCAACCCTGATTGTGAAGGATGGGTATCAAT
GGAGAAAGTATGGCCAAAAGGTTACAAGAGACAACCCATCACCTAGGGCT
TACTTCAAGTGTTCTTTCGCCCCAAGCTGTCCCGTAAAGAAGAAGGTGCA
AAGAAGTGCTGAGGATCCATCAATTTTAGTGGCAACTTATGAAGGAGAGC
ATAATCATCCTCAGCCTACGGATTCAAAAGCTGAATTATC
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