FC925436

Overview
NameFC925436
Unique NameFC925436
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14546 contig Ccv1_Contig14546:50..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC925436 vs. ExPASy Swiss-Prot
Match: LEA14_SOYBN (Desiccation protectant protein Lea14 homolog OS=Glycine max PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 36/137 (26.28%), Postives = 66/137 (48.18%), Query Frame = 3 
Query:  174 EETIGFGKPTADVTAVHIPKINLERADIVIDVXXXXXXXXXXXXXXXXXXVESDGRKLVSGLIPDSGTIHAHGEETVKIPVTLIYDDIKNAYDDIKPGMIIPYKIKVDLIVDVPVFGRLTLPLEKNGEIPIPYKPDI 584
            E+     KP A VT V   +++ +  + +  V                  ++S G+++ SG IPD G++ A     + +PV + +  + +   DI     I Y++ + L++D+PV G  T+PL + GEI +P   D+
Sbjct:   14 EKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVSNPYSTPIPICEIKYSLKSAGKEIASGTIPDPGSLKASDTTMLDVPVKVPHSILLSLAKDIGADWDIDYQLDLGLVIDLPVIGNFTIPLSQKGEIKLPTLSDM 150
The following BLAST results are available for this feature:
BLAST of FC925436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LEA14_SOYBN5.358e-1126.28Desiccation protectant protein Lea14 homolog OS=Gl... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YE12FM1 TF Citrus clementina cDNA clone KN0AAP11YE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925436 ID=FC925436; Name=FC925436; organism=Citrus clementina; type=EST; length=637bp
TCAGATCGCTCCCTTAACTGCATCAACTGTCAGGTATGGCATCATCTGAT
AAGCCGGAAGTAGTTGAAAGGGATGTTAAGGAGAAAGGGCACAAGGAGGA
TGACAAAGAAGAGGGAAAAGGTGGATTTATCGAAAAAGTCAAGGATTTTA
TCCATGATATTGGTGAAAAGATTGAGGAAACAATTGGATTTGGGAAGCCA
ACTGCTGATGTTACTGCAGTTCACATTCCTAAAATTAATCTTGAAAGGGC
AGATATTGTTATTGACGTGCTCATTAAAAACCCGAATCCTATACCGATCC
CTCTAATTGACATAAACTACTTGGTTGAGAGTGATGGAAGGAAATTGGTT
TCTGGATTGATCCCAGATTCTGGAACTATTCATGCACATGGCGAGGAGAC
TGTCAAAATCCCTGTTACTCTGATTTATGATGACATTAAAAATGCATATG
ATGATATCAAGCCTGGGATGATTATTCCATATAAGATCAAGGTTGACCTG
ATTGTAGATGTGCCGGTTTTTGGAAGGTTGACTCTTCCACTTGAGAAAAA
TGGAGAGATCCCCATTCCTTACAAGCCCGATATTGATCTCGAGAAGATTA
AGTTTGAGAGATTCTCATTTGAAGAAACTGTTGCAAT
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