FC925439

Overview
NameFC925439
Unique NameFC925439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length439
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9703 contig Ccv1_Contig9703:59..499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925439 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.886e-23
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 3
Query:   39 MSDTCGNCDCADRSHCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 236
            MSDTCGNCDCAD++ CVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of FC925439 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.399e-18
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 3
Query:   48 TCGNCDCADRSHCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCGS 239
            TCGNCDC D+S CVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of FC925439 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.827e-18
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 3
Query:   39 MSDTCGNCDCADRSHCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 233
            MSD CGNCDCAD S CVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of FC925439 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.917e-16
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 3
Query:   39 MSDTCGNCDCADRSHCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 233
            MS  C NCDC+D S C KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of FC925439 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.976e-16
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 3
Query:   39 MSDTCGNCDCADRSHCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 236
            MS  C NCDCAD + CVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of FC925439 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.891e-15
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 3
Query:   39 MSDTCGNCDCADRSHCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 236
            MSD CGNCDCAD+S CVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of FC925439 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.891e-15
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 3
Query:   39 MSDTCGNCDCADRSHCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 236
            MSD CGNCDCAD+S CVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of FC925439 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.770e-13
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 3
Query:   39 MSDTCGNCDCADRSHCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 236
            MSD CGNCDCAD+S CVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of FC925439 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.725e-13
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 3
Query:   39 MSDTCGNCDCADRSHCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 236
            MSD CG+CDCAD+S CVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of FC925439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA1.886e-2368.18Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC1.399e-1859.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE1.827e-1866.15Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV2.917e-1656.92Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO4.976e-1657.58Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ1.891e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.891e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ1.770e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI6.725e-1346.97Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YE13FM1 TF Citrus clementina cDNA clone KN0AAP11YE13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925439 ID=FC925439; Name=FC925439; organism=Citrus clementina; type=EST; length=439bp
CTTCCAGTCTTTAGTTCCAAGTTCTAAGCTCAATCAACATGTCGGACACC
TGCGGCAACTGCGACTGCGCTGACAGGAGCCATTGTGTGAAGAAGGGAAG
CAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCG
TTGTTGTCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGC
GGCCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGC
AAACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTG
GGGGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTAC
TTCGTTTTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTG
TGTCACCCATCACTCGTAATGTTTTGTGTTTCCTTCTTC
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