FC925442

Overview
NameFC925442
Unique NameFC925442
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3810 contig Ccv1_Contig3810:1..524. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925442 vs. ExPASy Swiss-Prot
Match: XYNB_PRUPE (Putative beta-D-xylosidase (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 7.110e-44
Identity = 84/142 (59.15%), Postives = 105/142 (73.94%), Query Frame = 2
Query:    2 TTFALSLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDVKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANL 427
            TTFA +L+  P   SVP+ TSL A  N+T+ S  +RV+H +CN    L +HVDVKNTG M GTHTLLVF  PP G W+ +KQL+GF K+H+  G+ + VR+ +HVCKHLSVVD+FGIRRIP+GEH L IGDL H +SLQ NL
Sbjct:  316 TTFAHNLAHGPTLVSVPL-TSLKATANSTMLSKTVRVSHPDCNALSPLDVHVDVKNTGSMDGTHTLLVFTSPPDGKWASSKQLMGFHKIHIATGSEKRVRIAVHVCKHLSVVDRFGIRRIPLGEHKLQIGDLSHHVSLQTNL 456          
BLAST of FC925442 vs. ExPASy Swiss-Prot
Match: BXL1_ARATH (Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.199e-36
Identity = 79/146 (54.11%), Postives = 101/146 (69.18%), Query Frame = 2
Query:    2 TTFALSLSKAP-NQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDVKNTGDMAGTHTLLVFAKPPAGN---WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANL 427
            TTF  SL+K+P  Q SV ++    A      SS++I+V+HTNCN    + LHV+V NTG+  GTHT+ VFA+PP         NKQLI F+KVHV AGA Q+V++D+  CKHL VVD++G RRIPMGEH LHIGDLKH+I +Q  L
Sbjct:  629 TTFTHSLAKSPLAQLSVSLSNLNSANTILNSSSHSIKVSHTNCNSFPKMPLHVEVSNTGEFDGTHTVFVFAEPPINGIKGLGVNKQLIAFEKVHVMAGAKQTVQVDVDACKHLGVVDEYGKRRIPMGEHKLHIGDLKHTILVQPQL 774          
BLAST of FC925442 vs. ExPASy Swiss-Prot
Match: BXL2_ARATH (Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.216e-35
Identity = 72/145 (49.66%), Postives = 101/145 (69.66%), Query Frame = 2
Query:    2 TTFALSLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDVKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGI 436
            T F  +++ AP    +PIA      +N T+S  +IRV H  C D +SLG+HV+V N G   GTHT+LVF+ PP G W+P KQL+ F++VHV  G  + V+++IHVCK+LSVVD+ G RRIP+G+H +HIGD  H++SLQA+  G+
Sbjct:  627 TRFTHNIADAPKV--IPIAVR---GRNGTVSGKSIRVTHARC-DRLSLGVHVEVTNVGSRDGTHTMLVFSAPPGGEWAPKKQLVAFERVHVAVGEKKRVQVNIHVCKYLSVVDRAGNRRIPIGDHGIHIGDESHTVSLQASTLGV 765          
BLAST of FC925442 vs. ExPASy Swiss-Prot
Match: BXL4_ARATH (Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL4 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.305e-21
Identity = 56/144 (38.89%), Postives = 87/144 (60.42%), Query Frame = 2
Query:    2 TTFALSLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLG-----LHVDVKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQ 418
            T F+ +L KAP+  S+ +  +     +   S +AI     +C +A+S G     +H+ V+N GD  G HT+ +F  PPA + SP K L+GF+K+ +       VR  + +CK LSVVD+ G R+I +G+H LH+GDLKHS+S++
Sbjct:  643 TKFSHTLVKAPSLVSLGLEENHVCRSSECQSLDAIG---PHCENAVSGGGSAFEVHIKVRNGGDREGIHTVFLFTTPPAIHGSPRKHLVGFEKIRLGKREEAVVRFKVEICKDLSVVDEIGKRKIGLGKHLLHVGDLKHSLSIR 783          
BLAST of FC925442 vs. ExPASy Swiss-Prot
Match: BXL3_ARATH (Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL3 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.884e-20
Identity = 56/142 (39.44%), Postives = 85/142 (59.86%), Query Frame = 2
Query:    2 TTFALSLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLG----LHVDVKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISL 415
            T F   L KAP   S+ +  +     +   S +AI     +C +A+  G    +H++VKNTGD AG+HT+ +F   P  + SP KQL+GF+K+ +       VR +++VCK LSVVD+ G R+I +G H LH+G LKHS+++
Sbjct:  633 TKFDHQLIKAPRLVSLSLDENHPCRSSECQSLDAIG---PHCENAVEGGSDFEVHLNVKNTGDRAGSHTVFLFTTSPQVHGSPIKQLLGFEKIRLGKSEEAVVRFNVNVCKDLSVVDETGKRKIALGHHLLHVGSLKHSLNI 771          
BLAST of FC925442 vs. ExPASy Swiss-Prot
Match: BXL6_ARATH (Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.070e-15
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:  122 NCNDAMSLGLHVDVKNTGDMAGTHTLLVFAK-PPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQ 418
            N  +++   + V V NTG++ G+H +++F+K PP  +  P KQLIG+ +VHV +  +      I  CK LSV +  G R IP+G H L +GDL+HS+S++
Sbjct:  692 NSCESLRFNVRVHVSNTGEIDGSHVVMLFSKMPPVLSGVPEKQLIGYDRVHVRSNEMMETVFVIDPCKQLSVANDVGKRVIPLGSHVLFLGDLQHSLSVE 791          
BLAST of FC925442 vs. ExPASy Swiss-Prot
Match: BXL5_ARATH (Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.207e-12
Identity = 46/138 (33.33%), Postives = 69/138 (50.00%), Query Frame = 2
Query:    8 FALSLSKAPNQFSVPIATSLYAFKNTTI----SSNAIRVAHTNCNDAMSLGLHVDVKNTGDMAGTHTLLVFAKPP------AGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIG 391
            F   LS +     V  A S+   K   I     + ++ ++  NC+D + + + + VKN G  +G+H +LVF KPP       G   P  QL+GF++V V     +   +D  VCK LS+VD  G R++  G H L IG
Sbjct:  622 FGYGLSYSSFSTFVLSAPSIIHIKTNPIMNLNKTTSVDISTVNCHD-LKIRIVIGVKNHGLRSGSHVVLVFWKPPKCSKSLVGGGVPLTQLVGFERVEVGRSMTEKFTVDFDVCKALSLVDTHGKRKLVTGHHKLVIG 758          
The following BLAST results are available for this feature:
BLAST of FC925442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
XYNB_PRUPE7.110e-4459.15Putative beta-D-xylosidase (Fragment) OS=Prunus pe... [more]
BXL1_ARATH3.199e-3654.11Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL... [more]
BXL2_ARATH1.216e-3549.66Probable beta-D-xylosidase 2 OS=Arabidopsis thalia... [more]
BXL4_ARATH1.305e-2138.89Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL... [more]
BXL3_ARATH1.884e-2039.44Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL... [more]
BXL6_ARATH1.070e-1540.00Probable beta-D-xylosidase 6 OS=Arabidopsis thalia... [more]
BXL5_ARATH4.207e-1233.33Probable beta-D-xylosidase 5 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YJ16FM1 TF Citrus clementina cDNA clone KN0AAP8YJ16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925442 ID=FC925442; Name=FC925442; organism=Citrus clementina; type=EST; length=524bp
CACGACATTTGCACTTTCATTATCAAAGGCACCAAATCAATTTTCTGTAC
CCATTGCAACAAGTCTCTACGCCTTCAAAAACACTACCATATCAAGCAAT
GCAATTAGGGTAGCACATACAAATTGCAATGATGCAATGTCATTAGGTTT
ACACGTTGACGTCAAAAACACCGGCGACATGGCCGGGACACATACGCTTT
TGGTTTTCGCAAAACCCCCGGCTGGAAATTGGTCTCCGAATAAGCAACTA
ATTGGTTTCAAGAAAGTTCATGTTACAGCCGGGGCACTACAAAGTGTTAG
GCTCGATATTCATGTGTGTAAGCACCTTAGTGTTGTTGATAAATTCGGAA
TTCGAAGAATTCCAATGGGTGAACATAGTCTCCATATTGGGGATCTCAAG
CATTCAATCTCTCTTCAAGCAAATTTGGAGGGGATAAATTTTAATAATGA
TGTTCCTAGTCTTCCTTGATCATTGCACAAGCAAAGGGAAGAATTAAAGG
ACAATATATTATATTTGTTGCAAT
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