FC925447

Overview
NameFC925447
Unique NameFC925447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14167 contig Ccv1_Contig14167:234..924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925447 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.652e-27
Identity = 68/192 (35.42%), Postives = 115/192 (59.90%), Query Frame = 1
Query:   16 APVPTFYRIYRKKSTESFQSLPYLVALFSSMLWFYYAL--VKQNAFLLVTINCFGCVIETIYIILFITYAP-KGSRNSTVKLFVSMNVGVFSLILLLTHF-LATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGL-FQKDICVALPNIVGFLLGLTQMLLYVIY 576
            AP  TF+RI++KKS E F  +PY+  + + MLW +Y L  V +++ L+ TIN  G VIE  Y+ +++ Y   K +    +  F+++ V +   I+L+T F L  D  +   +G IC   +++++ AP   + +V++TKSVE+MPF+LS    ++A +W  Y L F+ D  V   N +G  L L+Q+++Y +Y
Sbjct:   25 APAKTFWRIFKKKSVEEFSYVPYVATVMNCMLWVFYGLPVVHKDSILVSTINGVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIAMYGAPSLAIIKVVKTKSVEYMPFLLSLVCFVNAGIWTTYSLIFKIDYYVLASNGIGTFLALSQLIVYFMY 216          
BLAST of FC925447 vs. ExPASy Swiss-Prot
Match: R1AP1_XENLA (RAG1-activating protein 1 homolog OS=Xenopus laevis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 51/178 (28.65%), Postives = 100/178 (56.18%), Query Frame = 1
Query:   49 KKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLL-----THFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLY 567
            ++S E+ Q LP+L    +++ WFYY  +K +  L++ +N  G  ++++Y+  ++ Y+P+       + +V   V V   +LLL     T ++   ++R+  LG  C   ++S++ +PL+ +AQ+IR+KS + + F L+    L++  W  YGL Q D+ + +PN  G +  L +  L+
Sbjct:   32 QRSVENIQYLPFLTTDLNNLGWFYYGYLKGDGTLMI-VNVIGASLQSLYMGAYLLYSPE-------RRYVGSQVLVSLGVLLLGYCYFTLWILDLNSRLNQLGLFCSVFTISMYLSPLADLAQIIRSKSTKCLSFPLTVATFLTSSSWVLYGLVQSDLYITVPNFPGIVTSLVRFWLF 201          
BLAST of FC925447 vs. ExPASy Swiss-Prot
Match: R1AP1_XENTR (RAG1-activating protein 1 homolog OS=Xenopus tropicalis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 51/176 (28.98%), Postives = 98/176 (55.68%), Query Frame = 1
Query:   49 KKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLYVIY 576
            K+S E+ Q LP+L    +++ WFYY  +K +  L++ +N  G  ++T+Y+  +I Y+ +  R    ++ VS+ V +F      T +    ++R+  LG  C   ++S++ +PL+ +AQ+I++KS + + F L+    L++  W  YG  Q D+ + +PN  G +  L +  L+  Y
Sbjct:   32 KRSVENIQFLPFLTTDLNNLGWFYYGYLKGDGTLII-VNLIGASLQTLYMAAYILYSLE-RRYVVSQVLVSLGV-LFLAHCYFTLWTPDINSRLNQLGLFCSIFTISMYLSPLADLAQIIKSKSTKCLSFPLTVATFLTSTSWVLYGWVQSDLYITVPNFPGIVTSLLRFWLFSRY 204          
BLAST of FC925447 vs. ExPASy Swiss-Prot
Match: R1AP1_DROPS (RAG1-activating protein 1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=slv PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 49/178 (27.53%), Postives = 92/178 (51.69%), Query Frame = 1
Query:   46 RKKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHFLATDSTRIL-ILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLYVIY 576
            +KKST     +P++    S   W  Y ++ +   + V +N  G  +  IY +++  +    ++ + V+ F  +   + +++++ T+ LA     ++ I G  C  V+V  FAAPL+ +  VIR K+ E +P  L     L ++ W  YG+   D  + +PN +G LL + Q+ L+V+Y
Sbjct:   33 QKKSTGDSSGVPFICGFLSCSFWLRYGVLTEEQSI-VLVNIIGSTLFLIYTLIYYVFTV--NKRAFVRQFAFVLAVLIAVVVVYTNRLADQRDEMIRITGIFCCIVTVCFFAAPLATLLHVIRAKNSESLPLPLIATSFLVSLQWLIYGILISDSFIQIPNFLGCLLSMLQLSLFVVY 207          
BLAST of FC925447 vs. ExPASy Swiss-Prot
Match: R1AP1_MOUSE (RAG1-activating protein 1 OS=Mus musculus GN=Rag1ap1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 49/179 (27.37%), Postives = 96/179 (53.63%), Query Frame = 1
Query:   46 RKKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPK--GSRNSTVKLFVSMNVGVFSLILLLTHFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLYVIY 576
            R +S ++ Q LP+L    +++ W  Y ++K +  L++ +N  G V++T+YI+ ++ Y+P+  G    T  L   + +G     LL+    A    R+  LG  C   ++S++ +PL+ +A++++TKS + + F L+      +  W  YG   +D  + +PN+ G L  L ++ L+  Y
Sbjct:   35 RTRSVDNIQFLPFLTTDVNNLSWLSYGVLKGDGTLII-VNSVGAVLQTLYILAYLHYSPQKHGVLLQTATLLAVLLLGYGYFWLLVPDLEA----RLQQLGLFCSVFTISMYLSPLADLAKIVQTKSTQRLSFSLTIATLFCSASWSIYGFRLRDPYITVPNLPGILTSLIRLGLFCKY 208          
BLAST of FC925447 vs. ExPASy Swiss-Prot
Match: R1AP1_DROME (RAG1-activating protein 1 homolog OS=Drosophila melanogaster GN=slv PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16
Identity = 49/178 (27.53%), Postives = 92/178 (51.69%), Query Frame = 1
Query:   46 RKKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHFLATDSTRIL-ILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLYVIY 576
            +KKST     +P++    S   W  Y ++  N   +V +N  G  +  +Y +++  +    ++ + VK F    + V  ++++ T+ L     R++ + G +C  V+V  FAAPL+ +  VIR K+ E +P  L     + ++ W  YG+   D  + +PN +G +L L Q+ L+V+Y
Sbjct:   34 QKKSTGDSSGVPFICGFLSCSFWLRYGVLT-NEQSIVLVNIIGSTLFLVYTLIYYVFTV--NKRACVKQF-GFVLTVLVVVIVYTNRLEDQRDRMIHVTGIVCCIVTVCFFAAPLASLLHVIRAKNSESLPLPLIATSFVVSLQWLIYGILISDSFIQIPNFLGCILSLLQLGLFVLY 207          
BLAST of FC925447 vs. ExPASy Swiss-Prot
Match: R1AP1_DICDI (RAG1-activating protein 1 homolog OS=Dictyostelium discoideum GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 52/192 (27.08%), Postives = 96/192 (50.00%), Query Frame = 1
Query:   13 LAPVPTFYRIYRKKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAP--KGSRNSTVKLFVSMNVGVFSLILLLTHFLATDS--TRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLYVIY 576
            + P+ T   I  KK+  +   L ++ ++ +  LW  YAL+  N  +L  +N  G +    Y+  +       + SR+   K+ ++  + +   I+ ++++   D   TRI  LG++   V V +FA+PL  +A VI++K+ E M   ++    L  + W  +GL   DI + LPNI+  +L   Q+ L  +Y
Sbjct:   26 IMPLKTIRLIIEKKNVGTVAGLQFISSVLNCFLWISYALLTSNTTMLF-VNSIGMMFSIYYVFNYWKNINQVRASRDYLKKVMIACVLAI--TIISISYYNTVDDLDTRISRLGFLSSVVCVLMFASPLEKMAIVIQSKNSEGMIINVAILSLLCGLSWTIFGLLLNDIYIYLPNILASILSFVQLTLIKLY 214          
BLAST of FC925447 vs. ExPASy Swiss-Prot
Match: R1AP1_DANRE (RAG1-activating protein 1 homolog OS=Danio rerio GN=rag1ap1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 47/176 (26.70%), Postives = 88/176 (50.00%), Query Frame = 1
Query:   52 KSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGV----FSLILLLTHFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLY 567
            +S ++ Q LP+L    +++ W YY L+K +   ++ +N  G  ++T+YI  +  Y  +  R  T  L +   + V    FSL++      +    ++  LG  C   ++S++ +PL+ +  ++RTKSVE + F L+     ++  W  YGL   D  + +PN  G    L +  L+
Sbjct:   33 QSADNVQFLPFLTTCLNNLGWLYYGLLKGDG-TVIFVNIIGAFLQTVYIATYCHYTKEKRRVYTQTLLMVSVLCVAWVYFSLVI------SPGEAQLSQLGLTCSVFTISMYLSPLADLLDIMRTKSVERLSFSLTVATFFTSTSWTLYGLQLGDYYIMVPNTPGIFTSLIRFFLF 201          
BLAST of FC925447 vs. ExPASy Swiss-Prot
Match: R1AP1_HUMAN (RAG1-activating protein 1 OS=Homo sapiens GN=RAG1AP1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 48/178 (26.97%), Postives = 92/178 (51.69%), Query Frame = 1
Query:   52 KSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHF---LATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLYVIY 576
            +S ++ Q LP+L    +++ W  Y  +K +  L+V +N  G  ++T+YI+ ++ Y P   R   V L  +  +GV  L+L   +F   +     R+  LG  C   ++S++ +PL+ +A+VI+TKS + + + L+    L++  W  YG   +D  + + N  G +    +  L+  Y
Sbjct:   37 RSVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIV-VNTVGAALQTLYILAYLHYCP---RKRVVLLQTATLLGV--LLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKY 208          
BLAST of FC925447 vs. ExPASy Swiss-Prot
Match: R1AP1_CAEBR (RAG1-activating protein 1 homolog OS=Caenorhabditis briggsae GN=CBG13500 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 52/204 (25.49%), Postives = 94/204 (46.08%), Query Frame = 1
Query:   22 VPTFYRIYRKKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYA-PKGSRNSTVKLFVSMNVGVFSLILLLTHFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLYVIYKNANKVIIEEKKLPEAQL 630
            +P   +I R+ +      +P+L+ +     W  Y L+K + + ++ +N  G     +Y I F+ Y+ PK       K F    + V S I  +  ++A     +  LG IC+  ++  F APL+ +  V+R + V  +P  +     L +  W  YG   +DI + +PN +G  L + Q+ L+++         E +K P  QL
Sbjct:   25 IPICMQIRRQGAVGDISGVPFLMGVLGGSFWLRYGLLKMD-YTMIIVNVVGVFCMAVYCIFFLIYSLPK-------KTFTCQLILVTSTITGMVVWIAF-KPNLDYLGIICMTFNIMNFGAPLAGLGVVLRNREVSTLPLPMCVANFLVSSQWCLYGNLVQDIYIIIPNGIGMFLAIVQLSLFIVLPRR-----ENEKSPLEQL 214          
The following BLAST results are available for this feature:
BLAST of FC925447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RPG1_ARATH1.652e-2735.42Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis tha... [more]
R1AP1_XENLA4.078e-1828.65RAG1-activating protein 1 homolog OS=Xenopus laevi... [more]
R1AP1_XENTR5.326e-1828.98RAG1-activating protein 1 homolog OS=Xenopus tropi... [more]
R1AP1_DROPS5.888e-1727.53RAG1-activating protein 1 homolog OS=Drosophila ps... [more]
R1AP1_MOUSE1.312e-1627.37RAG1-activating protein 1 OS=Mus musculus GN=Rag1a... [more]
R1AP1_DROME6.510e-1627.53RAG1-activating protein 1 homolog OS=Drosophila me... [more]
R1AP1_DICDI3.572e-1427.08RAG1-activating protein 1 homolog OS=Dictyostelium... [more]
R1AP1_DANRE3.572e-1426.70RAG1-activating protein 1 homolog OS=Danio rerio G... [more]
R1AP1_HUMAN7.958e-1426.97RAG1-activating protein 1 OS=Homo sapiens GN=RAG1A... [more]
R1AP1_CAEBR7.958e-1425.49RAG1-activating protein 1 homolog OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YI07FM1 TF Citrus clementina cDNA clone KN0AAP3YI07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925447 ID=FC925447; Name=FC925447; organism=Citrus clementina; type=EST; length=691bp
TCCTCGTGTACTTTGGCTCCGGTGCCAACATTTTACCGAATTTACAGAAA
AAAATCAACAGAGAGCTTCCAGTCTCTGCCTTATCTGGTAGCATTGTTCA
GCTCAATGCTGTGGTTCTACTATGCGCTTGTGAAACAAAATGCTTTCCTT
CTCGTTACCATCAACTGCTTTGGATGTGTCATTGAGACTATTTACATCAT
CCTCTTCATCACTTATGCCCCAAAAGGCAGCCGGAACTCAACTGTCAAAC
TATTTGTTTCGATGAACGTTGGAGTGTTCTCTTTGATTCTTCTTCTCACA
CACTTTCTTGCAACCGATTCAACTCGGATCCTAATTCTTGGTTGGATTTG
TGTTGCCGTTTCTGTTAGTGTCTTTGCAGCACCCTTAAGCATTGTTGCAC
AAGTTATCCGAACAAAAAGTGTTGAGTTCATGCCATTCATCCTATCATTT
TTTCTTACGCTGAGTGCAATTATGTGGTTCGCTTACGGTCTTTTTCAGAA
AGACATATGCGTTGCTCTCCCGAATATCGTGGGGTTCCTCTTAGGATTGA
CTCAAATGTTGCTTTATGTGATATACAAGAACGCCAACAAAGTTATAATA
GAGGAAAAAAAATTACCAGAAGCACAGTTAAAGAGCATCGTAGTACTGAG
CAATTTAGGAGCTTCTGAAGTGTACCCGGTTGATATTCATC
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