FC925454

Overview
NameFC925454
Unique NameFC925454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1992 contig Ccv1_Contig1992:3..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925454 vs. ExPASy Swiss-Prot
Match: MFSD5_HUMAN (Major facilitator superfamily domain-containing protein 5 OS=Homo sapiens GN=MFSD5 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.689e-18
Identity = 53/140 (37.86%), Postives = 78/140 (55.71%), Query Frame = 2
Query:    5 EHHKR-GFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATF 421
            EH +R  F  +W+  TF++A F  N ++A+++G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G    + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G IF++F
Sbjct:  155 EHVERHDFPAEWIPATFARAAFW-NHVLAVVAGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENY---DRQRAFSRTCAGGLRCLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHG--APLGIIFSSF 288          
BLAST of FC925454 vs. ExPASy Swiss-Prot
Match: MFSD5_PONAB (Major facilitator superfamily domain-containing protein 5 OS=Pongo abelii GN=MFSD5 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.206e-18
Identity = 52/140 (37.14%), Postives = 78/140 (55.71%), Query Frame = 2
Query:    5 EHHKR-GFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATF 421
            EH +R  F  +W+  TF++A F  N ++A+++G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G    + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G +F++F
Sbjct:  155 EHVERHDFPTEWIPATFARAAFW-NHVLAVVAGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENY---DRQRAFSRTCAGGLRCLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHG--APLGIVFSSF 288          
BLAST of FC925454 vs. ExPASy Swiss-Prot
Match: MFSD5_MOUSE (Major facilitator superfamily domain-containing protein 5 OS=Mus musculus GN=Mfsd5 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.420e-18
Identity = 52/140 (37.14%), Postives = 77/140 (55.00%), Query Frame = 2
Query:    5 EHHKR-GFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATF 421
            EH +R  F  +W+  TF++A F  N ++A+ +G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G    + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G +F++F
Sbjct:  155 EHVERHDFPAEWIPATFARAAFW-NHVLAVAAGVAAEAVASWIGLGPVAPFVAAIPLLALTGALALRNWGENY---DRQRAFSKTCAGGLRCLLSDRRVLLLGVIQALFESVIFIFVFLWTPVLDPHG--APLGIVFSSF 288          
BLAST of FC925454 vs. ExPASy Swiss-Prot
Match: MFSD5_BOVIN (Major facilitator superfamily domain-containing protein 5 OS=Bos taurus GN=MFSD5 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.420e-18
Identity = 53/140 (37.86%), Postives = 77/140 (55.00%), Query Frame = 2
Query:    5 EHHKR-GFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATF 421
            EH +R  F  +W+  TF++A F  N ++A+ +G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G    + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G IF++F
Sbjct:  155 EHLERHDFPTEWIPATFARAAFW-NHVLAVAAGVAAEAVACWMGLGPVAPFVAAIPLLALAGALALHNWGENY---DRQRAFSRTCAGGLRCLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHG--APLGIIFSSF 288          
BLAST of FC925454 vs. ExPASy Swiss-Prot
Match: MFSD5_XENLA (Major facilitator superfamily domain-containing protein 5 OS=Xenopus laevis GN=mfsd5 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.385e-18
Identity = 50/140 (35.71%), Postives = 76/140 (54.29%), Query Frame = 2
Query:    2 AEHHKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATF 421
            AE H   F  +WL  TF++A    NG +AI +G+  N+  +   LGP +P   A   L + +V+++  W ENYG  S  + +          +  D ++ LLG IQ+LFE  +Y F+FLWTP L P++   P G  F++F
Sbjct:  159 AEQHD--FPAEWLPHTFTRAA-AWNGGIAIAAGITANVCAEWLGLGPASPSVLAVPLLVLSVVLVIREWDENYGQTSSFRRVCGD---GLRCLLRDRRVLLLGTIQALFESVVYIFIFLWTPVLDPHN--APLGIAFSSF 290          
BLAST of FC925454 vs. ExPASy Swiss-Prot
Match: MFSD5_XENTR (Major facilitator superfamily domain-containing protein 5 OS=Xenopus tropicalis GN=mfsd5 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.186e-17
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 2
Query:    2 AEHHKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATF 421
            AE H   F  +WL  TF++A    NG +AI +G+  N   +   LGP +P   A   L + + +++  W ENYG  S  + +          +  D ++ LLG IQ+LFE  +Y F+FLWTP L P++   P G  F++F
Sbjct:  159 AEQHD--FPAEWLPHTFTRAA-AWNGGIAIAAGVIANACAEWLGLGPASPSVLAVPLLVLSVALVIREWDENYGQTSSFRRVCGD---GLRCLLRDRRVLLLGTIQALFESVVYIFIFLWTPVLDPHN--TPLGIAFSSF 290          
BLAST of FC925454 vs. ExPASy Swiss-Prot
Match: MFSD5_TAKRU (Major facilitator superfamily domain-containing protein 5 OS=Takifugu rubripes GN=mfsd5 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.848e-16
Identity = 54/154 (35.06%), Postives = 78/154 (50.65%), Query Frame = 2
Query:   23 FEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPS-----ESKDLLTQFRGAAVAIA----------------SDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATF 421
            F ++W+  TF+KA    +GL A+ +GL  NLL +   LGPVAPF  A  FLA     +L+ W +   + S     ++  L T   G     A                SD+++ LLG +Q+LFE  +Y F+FLWTP L P+    P G +F+ F
Sbjct:  163 FPKEWIPTTFTKAATWNHGL-AVGAGLVANLLAEWLHLGPVAPFLLAVPFLACCAWFVLTDWAKEEAEKSPEGIKQTLPLGTLNGGVTHLSARARFSRSCSDGLRCMLSDKRVMLLGGVQALFESVLYIFIFLWTPVLDPHGS--PLGIVFSCF 313          
BLAST of FC925454 vs. ExPASy Swiss-Prot
Match: MFSD5_DANRE (Major facilitator superfamily domain-containing protein 5 OS=Danio rerio GN=mfsd5 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.253e-13
Identity = 52/153 (33.99%), Postives = 73/153 (47.71%), Query Frame = 2
Query:   23 FEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTEN------YGD-----------PSESKDLLTQFRGAAV----AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFAT 418
            F ++W+ +TF K      GL A+ +GL  NL  +   LGPVAPF  A   LA     +LS W +        GD           P        +F  + V     + SD ++ LLG +Q+LFE  +Y FVFLWTP L P+    P G +F++
Sbjct:  165 FPKEWIPVTFGKVANWNYGL-AVGAGLVANLFAEWLGLGPVAPFLLAIPSLAACAWFVLSEWGQEDKQEGMNGDKNAPLLNSLNTPKLQLSARARFWRSCVDGLRCLLSDRRVMLLGGVQALFESVLYIFVFLWTPVLDPHGP--PLGIVFSS 314          
The following BLAST results are available for this feature:
BLAST of FC925454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MFSD5_HUMAN1.689e-1837.86Major facilitator superfamily domain-containing pr... [more]
MFSD5_PONAB2.206e-1837.14Major facilitator superfamily domain-containing pr... [more]
MFSD5_MOUSE6.420e-1837.14Major facilitator superfamily domain-containing pr... [more]
MFSD5_BOVIN6.420e-1837.86Major facilitator superfamily domain-containing pr... [more]
MFSD5_XENLA8.385e-1835.71Major facilitator superfamily domain-containing pr... [more]
MFSD5_XENTR3.186e-1735.00Major facilitator superfamily domain-containing pr... [more]
MFSD5_TAKRU7.848e-1635.06Major facilitator superfamily domain-containing pr... [more]
MFSD5_DANRE1.253e-1333.99Major facilitator superfamily domain-containing pr... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YI10FM1 TF Citrus clementina cDNA clone KN0AAP3YI10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925454 ID=FC925454; Name=FC925454; organism=Citrus clementina; type=EST; length=582bp
TGCAGAGCACCACAAGAGGGGCTTTGAGCAACAATGGCTGTCTATAACAT
TCTCAAAGGCAATATTTCTTGGAAATGGTCTTGTTGCTATTTTGTCTGGA
TTGTTTGGAAACCTTCTTGTTGATTCATTTTCTCTCGGGCCTGTGGCCCC
CTTTGATGCTGCTGCTTGCTTTCTCGCGATTGGAATGGTCATTATTTTGT
CATCTTGGACCGAAAACTATGGAGATCCGTCAGAGAGCAAGGACTTGCTT
ACCCAATTCAGGGGTGCTGCTGTGGCAATCGCTTCTGATGAAAAAATTGC
CTTACTGGGTGCTATCCAGTCCTTGTTTGAAGGGTCGATGTATACCTTTG
TGTTCCTCTGGACTCCTGCTTTAAGCCCAAATGATGAGGAAATTCCCCAT
GGTTTTATTTTTGCAACTTTCATGTTGGCTTCAATGTTGGGAAGTTCCCT
CGCATCTCGTTTGATGGCACGCTCATCACCAAGGGTTGAGAGCTACATGC
AAATAGTTTTTGTAGTGTCATCTGTCTCGCTATTGCTTCCAATTGTAACC
AGTTTCCTGGTAACACCTTCCAATGTGAAAAG
back to top