FC925455

Overview
NameFC925455
Unique NameFC925455
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14362 contig Ccv1_Contig14362:23..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925455 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 1.543e-22
Identity = 54/63 (85.71%), Postives = 56/63 (88.89%), Query Frame = 2
Query:  470 LADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASF 658
            L D K+  SFLSSDGSL +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR  SF
Sbjct:  164 LTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRSVSF 224          

HSP 2 Score: 23.0978 bits (48), Expect = 1.543e-22
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 3
Query:  657 FEYGRYGN 680
            FEYGRYGN
Sbjct:  224 FEYGRYGN 231          

HSP 3 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = 2
Query:  128 DPDFSGS--ARFDKPRISAARVIGASTASFSGLSSLIFRFPPNFVRQLSTKARRNCSNIGVAQI 313
            DPD  GS      + R+ A+  I +S    +GLSS I RFPPNFVRQLS KARRNCSNIGVAQI
Sbjct:   25 DPDLVGSPVGGSSRRRVHASAGISSSFTGDAGLSSRILRFPPNFVRQLSIKARRNCSNIGVAQI 88          
The following BLAST results are available for this feature:
BLAST of FC925455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
METB_ARATH1.543e-2285.71Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YJ22FM1 TF Citrus clementina cDNA clone KN0AAP8YJ22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925455 ID=FC925455; Name=FC925455; organism=Citrus clementina; type=EST; length=682bp
TCTTATCATACATTACAGAGAGAGCAAAGCCGCCGTTCAATACGACGTCG
TAATGGCCGTGTCCTCATGTTCGAGTCAAAAAATTTTGTCCTTCTCTTCT
TCTTGTTCGTCTTTTGAGTGCCGTTCCGATCCCGACTTCTCGGGCTCGGC
TCGGTTTGATAAACCGAGGATCTCGGCGGCGCGAGTCATCGGAGCGTCGA
CGGCGTCGTTTAGCGGCCTGTCGTCTCTGATTTTCAGGTTTCCGCCGAAC
TTCGTGCGCCAGCTTAGCACGAAGGCCAGGAGGAACTGCAGCAACATCGG
CGTGGCGCAAATCGTGGCGGCTTCGTGGTCGAACGGTGTGGGTTCCGGCT
CTAACTCGGCGGCGGCTGCAGCAGCTTCCGCTGCCCCCGCCCCGCCCGTC
CCCGTCGAGATTACGAGCGGCGATGACATCGCGCTTGTTGACGGATTGAA
AAATGTACATCTGGAGGCCCTCGCTGATTTGAAAAACGAGGCTTCGTTTT
TGAGCTCCGATGGGAGCCTTGCAATTCATGCCGGTGAAAGATTAGGTCGT
GGTATAGTAACAGATGCAATTACTACCCCAGTGGTGAATACTTCTGCTTA
CTTCTTTAAGAAAACTGCTGAGCTTATTGATTTCAAGGAGAAACGTCGTG
CAAGTTTTTGAATATGGGAGGTATGGAAACCC
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