FC925457

Overview
NameFC925457
Unique NameFC925457
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3812 contig Ccv1_Contig3812:1..344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925457 vs. ExPASy Swiss-Prot
Match: NOP10_ARATH (H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana GN=At2g20490 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 9.960e-24
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 2
Query:   47 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQKPPPKY 238
            MYLQ YIN+ G+KVYTTKKESP G+  +SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P +Y
Sbjct:    1 MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 64          
BLAST of FC925457 vs. ExPASy Swiss-Prot
Match: NOP10_DANRE (H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio GN=nop10 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.346e-20
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 2
Query:   47 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQKPPP 232
            M+LQFY+N+NG++VYT KK  P+G P  SAHPARFSPDDK+SR RV +KKRFGLL TQ+P P
Sbjct:    1 MFLQFYLNENGERVYTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQPRP 62          
BLAST of FC925457 vs. ExPASy Swiss-Prot
Match: NOP10_DROME (H/ACA ribonucleoprotein complex subunit 3 OS=Drosophila melanogaster GN=CG7637 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.681e-20
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 2
Query:   47 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQKPPPKY 238
            MYL + IN+NGD+VYT KK +  G P  SAHPARFSP+DKYSRQR+ +KKRFGLL TQKP P Y
Sbjct:    1 MYLMYTINENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKPEPIY 64          
BLAST of FC925457 vs. ExPASy Swiss-Prot
Match: NOP10_MOUSE (H/ACA ribonucleoprotein complex subunit 3 OS=Mus musculus GN=Nop10 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.393e-17
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 2
Query:   47 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQKPPP 232
            M+LQ+Y+N+ GD+VYT KK  P G    SAHPARFSPDDKYSR R+ +KKRF +L TQ+P P
Sbjct:    1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQPRP 62          
BLAST of FC925457 vs. ExPASy Swiss-Prot
Match: NOP10_HUMAN (H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens GN=NOP10 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.393e-17
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 2
Query:   47 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQKPPP 232
            M+LQ+Y+N+ GD+VYT KK  P G    SAHPARFSPDDKYSR R+ +KKRF +L TQ+P P
Sbjct:    1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQPRP 62          
BLAST of FC925457 vs. ExPASy Swiss-Prot
Match: NOP10_SCHPO (H/ACA ribonucleoprotein complex subunit 3 OS=Schizosaccharomyces pombe GN=nop10 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.029e-17
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 2
Query:   47 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQKPPPKY 238
            M+L +Y+ND G +VYT KK SP G   +S+HPARFSPDDKYSRQR  LKKRF +L TQ P   Y
Sbjct:    1 MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLPAKPY 64          
BLAST of FC925457 vs. ExPASy Swiss-Prot
Match: NOP10_DICDI (H/ACA ribonucleoprotein complex subunit 3 OS=Dictyostelium discoideum GN=nop10 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.627e-16
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 2
Query:   47 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQKPPPKY 238
            M+L +Y + +G +VYT KKESP      SAHPARFS DDKYSR+R+ LKKRFGLL TQ+PP ++
Sbjct:    1 MHLMYYNDKDGQRVYTLKKESPNHEATYSAHPARFSVDDKYSRERIALKKRFGLLLTQQPPLEF 64          
BLAST of FC925457 vs. ExPASy Swiss-Prot
Match: NOP10_DEBHA (H/ACA ribonucleoprotein complex subunit 3 OS=Debaryomyces hansenii GN=NOP10 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 2
Query:   47 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ 220
            M+L + +  +G +VYT  K +  G   +SAHPARFSPDDKYSRQRV LKKRFGLLPTQ
Sbjct:    1 MHLMYTLGPDGKRVYTLNKTTSDGEITKSAHPARFSPDDKYSRQRVTLKKRFGLLPTQ 58          
BLAST of FC925457 vs. ExPASy Swiss-Prot
Match: NOP10_CAEEL (Putative H/ACA ribonucleoprotein complex subunit 3-like protein OS=Caenorhabditis elegans GN=C25A1.6 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 32/59 (54.24%), Postives = 49/59 (83.05%), Query Frame = 2
Query:   47 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQK 223
            M+L++++++N  +VYT K+ +P+G    +AHPARFSP+DK S+ R+++KKRFGLLPTQK
Sbjct:    1 MFLRYFLDENQQRVYTLKRTAPSGEQTLTAHPARFSPEDKNSKYRIIIKKRFGLLPTQK 59          
BLAST of FC925457 vs. ExPASy Swiss-Prot
Match: NOP10_YEAST (H/ACA ribonucleoprotein complex subunit 3 OS=Saccharomyces cerevisiae GN=NOP10 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 2
Query:   47 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ 220
            M+L + +  +G ++YT KK + +G   +SAHPARFSPDDKYSRQRV LKKRFGL+P Q
Sbjct:    1 MHLMYTLGPDGKRIYTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ 58          
The following BLAST results are available for this feature:
BLAST of FC925457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
NOP10_ARATH9.960e-2478.13H/ACA ribonucleoprotein complex subunit 3-like pro... [more]
NOP10_DANRE1.346e-2069.35H/ACA ribonucleoprotein complex subunit 3 OS=Danio... [more]
NOP10_DROME6.681e-2068.75H/ACA ribonucleoprotein complex subunit 3 OS=Droso... [more]
NOP10_MOUSE1.393e-1762.90H/ACA ribonucleoprotein complex subunit 3 OS=Mus m... [more]
NOP10_HUMAN1.393e-1762.90H/ACA ribonucleoprotein complex subunit 3 OS=Homo ... [more]
NOP10_SCHPO9.029e-1762.50H/ACA ribonucleoprotein complex subunit 3 OS=Schiz... [more]
NOP10_DICDI2.627e-1660.94H/ACA ribonucleoprotein complex subunit 3 OS=Dicty... [more]
NOP10_DEBHA1.104e-1463.79H/ACA ribonucleoprotein complex subunit 3 OS=Debar... [more]
NOP10_CAEEL1.104e-1454.24Putative H/ACA ribonucleoprotein complex subunit 3... [more]
NOP10_YEAST4.194e-1460.34H/ACA ribonucleoprotein complex subunit 3 OS=Sacch... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YJ23FM1 TF Citrus clementina cDNA clone KN0AAP8YJ23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925457 ID=FC925457; Name=FC925457; organism=Citrus clementina; type=EST; length=344bp
GCCTTCAGCCGTTTTTAAAAGACGAAAGGCTTAGCGAGCGATTAAGATGT
ATCTTCAGTTCTACATTAACGATAATGGCGATAAAGTTTACACCACTAAG
AAAGAGTCGCCAACGGGAATGCCTGCTCAATCTGCTCATCCAGCTCGCTT
TTCTCCTGACGACAAATACTCAAGGCAAAGAGTCCTTCTGAAGAAGCGCT
TCGGTCTTCTGCCAACACAGAAACCTCCTCCGAAGTACTGAAATGTTTTA
AAGGCTTAGATTATTGGTGTATCATTTCAAGCTTCTTCCAAATTGGAGGT
TCCAATCTTCCAATATTTATCATCGTGAGATTGTGTAATGTTAC
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