FC925466

Overview
NameFC925466
Unique NameFC925466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1994 contig Ccv1_Contig1994:1..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD2_PETHY (ER lumen protein retaining receptor OS=Petunia hybrida GN=ERD2 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 9.917e-80
Identity = 143/164 (87.20%), Postives = 156/164 (95.12%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFRLAGDMTHLASVLVLLLKIHTIKSCAG+SLKTQELYALVF TRYLDIFT++IS YNT MKL+FLGSS SIVWY++ HKIV RSYDKDQDTFRH F+VLPCL+LAL+INE+FTFKEVMWTFS+YLEAVAILPQLVLLQRTRNIDNLTGQY+FLLGAYR+ Y
Sbjct:    1 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGVSLKTQELYALVFVTRYLDIFTDFISLYNTTMKLVFLGSSLSIVWYMRHHKIVRRSYDKDQDTFRHLFLVLPCLLLALVINEKFTFKEVMWTFSIYLEAVAILPQLVLLQRTRNIDNLTGQYIFLLGAYRSFY 164          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD2_ARATH (ER lumen protein retaining receptor OS=Arabidopsis thaliana GN=ERD2 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.801e-66
Identity = 118/164 (71.95%), Postives = 141/164 (85.98%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFR AGDM+HL SVL+LLLKI+  KSCAGISLKTQELYALVF TRYLD+FT+Y+S YN+IMK++F+ SS +IVW ++RH +V RSYDKD DTFRH ++VL C VL L++NE+FT +EV W FS+YLEAVAILPQLVLLQR+ N+DNLTGQYV  LGAYR LY
Sbjct:    1 MNIFRFAGDMSHLISVLILLLKIYATKSCAGISLKTQELYALVFLTRYLDLFTDYVSLYNSIMKIVFIASSLAIVWCMRRHPLVRRSYDKDLDTFRHQYVVLACFVLGLILNEKFTVQEVFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVVFLGAYRGLY 164          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD21_XENTR (ER lumen protein retaining receptor 1 OS=Xenopus tropicalis GN=kdelr1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.492e-46
Identity = 86/164 (52.44%), Postives = 123/164 (75.00%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFR  GD++HL+++L+LLLKI   +SCAGIS K+Q L+A+VF TRYLD+FTN+IS YNT MK++++ SS++ +W I  +     +YD + DTFR  F+++P  +LA L+N  FT  E++WTFS+YLE+VAILPQL ++ +T   + +T  Y+F LG YRALY
Sbjct:    1 MNIFRFLGDISHLSAILILLLKIWKSRSCAGISGKSQLLFAIVFTTRYLDLFTNFISLYNTSMKMVYVASSYATIWMI--YSKFKATYDGNHDTFRVEFLIVPTAILAFLVNHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGIYRALY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ER21B_XENLA (ER lumen protein retaining receptor 1-B OS=Xenopus laevis GN=kdelr1-B PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.224e-45
Identity = 85/164 (51.83%), Postives = 123/164 (75.00%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFR  GD++HL+++++LLLKI   +SCAGIS K+Q L+A+VF TRYLD+FTN+ISFYNT MK++++ SS++ VW I  +     +YD + DTFR  F+++P  +L+ L+N  FT  E++WTFS+YLE+VAILPQL ++ +T   + +T  Y+F LG YR LY
Sbjct:    1 MNIFRFLGDISHLSAIIILLLKIWKSRSCAGISGKSQLLFAIVFTTRYLDLFTNFISFYNTSMKVVYVASSYATVWMI--YSKFKATYDGNHDTFRVEFLIVPTAILSFLVNHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGIYRTLY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ER21A_XENLA (ER lumen protein retaining receptor 1-A OS=Xenopus laevis GN=kdelr1-A PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.087e-45
Identity = 86/164 (52.44%), Postives = 120/164 (73.17%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFR  GD++HL+++ +LLLKI   +SCAGIS K+Q L+A+VF  RYLD+FTNYISFYNT MK++++ SS++ VW I  +     +YD + DTFR  F+++P  +LA L+N  FT  E+ WTFS+YLE+VAILPQL ++ +T   + +T  Y+F LG YR LY
Sbjct:    1 MNIFRFLGDISHLSAIFILLLKIWKSRSCAGISGKSQLLFAIVFTARYLDLFTNYISFYNTSMKVVYVASSYATVWMI--YSKFKATYDGNHDTFRVEFLIVPTAILAFLVNHDFTPLEIFWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGIYRTLY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD2_DROME (ER lumen protein retaining receptor OS=Drosophila melanogaster GN=KdelR PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.726e-45
Identity = 87/166 (52.41%), Postives = 127/166 (76.51%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVW--YIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFR AGD++H+ ++++LLLKI   +SCAGIS K+Q L+A+V+ TRYLD+FT Y+S YN++MK++FL +S + V+  Y+K       +YD + D+FR  F+++PC +L+L+IN  FT  EV+WTFS+YLE+VAILPQL L+ RT   +++T  Y+F LG+YRALY
Sbjct:    1 MNIFRFAGDLSHVFAIIILLLKIWKTRSCAGISGKSQILFAVVYLTRYLDLFTTYVSLYNSVMKVLFLATSGATVYLMYVK----FKATYDHNHDSFRIEFLLVPCALLSLVINHEFTVMEVLWTFSIYLESVAILPQLFLVSRTGEAESITSHYLFALGSYRALY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD2_CAEEL (ER lumen protein retaining receptor OS=Caenorhabditis elegans GN=erd-2 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 4.649e-45
Identity = 90/164 (54.88%), Postives = 120/164 (73.17%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MN+FR   D+ H  +++VLLLKI   +SC GIS ++Q L+ALVF TRYLD+FTN+ SFYNT MK+ +L +SF  V Y+   K    +YD++ D+FR  F+V+P ++LALLIN  F F EVMWTFS+YLEAVAI+PQL +L RT N + +T  Y+F LG+YR LY
Sbjct:    1 MNLFRFTADVAHAIAIVVLLLKIWKSRSCEGISGRSQLLFALVFVTRYLDLFTNFFSFYNTAMKIFYLVASFGTV-YLMWAKF-KATYDRNNDSFRIEFLVIPSMILALLINHEFIFMEVMWTFSIYLEAVAIMPQLFMLSRTGNAETITAHYLFALGSYRFLY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD21_RAT (ER lumen protein retaining receptor 1 OS=Rattus norvegicus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.072e-45
Identity = 86/164 (52.44%), Postives = 119/164 (72.56%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MN+FR  GD++HL ++++LLLKI   +SCAGIS K+Q L+A+VF  RYLD+FTNYIS YNT MK++++  SF+ VW I  +     +YD + DTFR  F+V+P  VLA L+N  FT  E++WTFS+YLE+VAILPQL ++ +T   + +T  Y+F LG YR LY
Sbjct:    1 MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWMI--YSKFKATYDGNHDTFRVEFLVVPTAVLAFLVNHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD21_BOVIN (ER lumen protein retaining receptor 1 OS=Bos taurus GN=KDELR1 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 6.072e-45
Identity = 85/164 (51.83%), Postives = 119/164 (72.56%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MN+FR  GD++HL ++++LLLKI   +SCAGIS K+Q L+A+VF  RYLD+FTNYIS YNT MK++++  SF+ VW I  +     +YD + DTFR  F+V+P  +LA L+N  FT  E++WTFS+YLE+VAILPQL ++ +T   + +T  Y+F LG YR LY
Sbjct:    1 MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWMI--YSKFKATYDGNHDTFRVEFLVIPTAILAFLVNHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD21_MOUSE (ER lumen protein retaining receptor 1 OS=Mus musculus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.931e-45
Identity = 85/164 (51.83%), Postives = 119/164 (72.56%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MN+FR  GD++HL ++++LLLKI   +SCAGIS K+Q L+A+VF  RYLD+FTNYIS YNT MK++++  SF+ VW I  +     +YD + DTFR  F+V+P  +LA L+N  FT  E++WTFS+YLE+VAILPQL ++ +T   + +T  Y+F LG YR LY
Sbjct:    1 MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWMI--YSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLY 162          
The following BLAST results are available for this feature:
BLAST of FC925466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ERD2_PETHY9.917e-8087.20ER lumen protein retaining receptor OS=Petunia hyb... [more]
ERD2_ARATH2.801e-6671.95ER lumen protein retaining receptor OS=Arabidopsis... [more]
ERD21_XENTR5.492e-4652.44ER lumen protein retaining receptor 1 OS=Xenopus t... [more]
ER21B_XENLA1.224e-4551.83ER lumen protein retaining receptor 1-B OS=Xenopus... [more]
ER21A_XENLA2.087e-4552.44ER lumen protein retaining receptor 1-A OS=Xenopus... [more]
ERD2_DROME2.726e-4552.41ER lumen protein retaining receptor OS=Drosophila ... [more]
ERD2_CAEEL4.649e-4554.88ER lumen protein retaining receptor OS=Caenorhabdi... [more]
ERD21_RAT6.072e-4552.44ER lumen protein retaining receptor 1 OS=Rattus no... [more]
ERD21_BOVIN6.072e-4551.83ER lumen protein retaining receptor 1 OS=Bos tauru... [more]
ERD21_MOUSE7.931e-4551.83ER lumen protein retaining receptor 1 OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YI23FM1 TF Citrus clementina cDNA clone KN0AAP3YI23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925466 ID=FC925466; Name=FC925466; organism=Citrus clementina; type=EST; length=655bp
ACGCAAAACTGTCTTAGAAAAGCTTCCCTTGGCTGTTGGGTCGACCGGAG
ATCTGAGGAAATTTCATCTTTACATTTACCAGAAATCACATTCCGGTGAT
CCAAACACTTTGTAAAATCACATTTTTCCAAAAAAAAAAAGAAGTAAGGA
AAAAGAAAAAAAGATGAATATATTCAGGTTAGCAGGGGACATGACCCATT
TGGCCAGCGTCCTTGTTTTGCTCCTCAAGATCCACACCATCAAATCTTGT
GCTGGTATATCCCTGAAGACTCAGGAACTCTACGCTCTCGTCTTTGCTAC
TCGCTACTTGGATATATTTACAAATTACATTTCATTCTATAATACTATAA
TGAAGTTAATATTCCTGGGGAGCTCTTTCTCAATTGTTTGGTACATAAAG
CGCCACAAGATTGTTCATAGATCTTATGATAAGGACCAAGACACATTTCG
CCATTGGTTTATCGTGCTGCCTTGCCTGGTTCTGGCCTTACTTATAAATG
AGAGGTTTACCTTTAAAGAGGTAATGTGGACATTTTCTTTATATTTAGAA
GCCGTTGCCATACTTCCTCAGCTTGTATTGTTGCAGAGAACAAGAAATAT
CGATAACTTGACAGGACAATATGTTTTTCTCCTCGGCGCATACCGTGCGT
TGTAC
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