FC925468

Overview
NameFC925468
Unique NameFC925468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14639 contig Ccv1_Contig14639:1..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925468 vs. ExPASy Swiss-Prot
Match: STR16_ARATH (Thiosulfate sulfurtransferase OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.922e-23
Identity = 58/114 (50.88%), Postives = 73/114 (64.04%), Query Frame = 3
Query:  114 TVDVRAAKNLLESGGYGYLDVRTAEEFEEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 455
            +V V  A +LL +G + YLDVRT EEF +GH   A   N+PYM     G  KNPDFL++V S   + D ++VGCQSG RS+ AT DLL AGF  V +  GG+ AW +NGL  KA
Sbjct:   10 SVSVTVAHDLLLAG-HRYLDVRTPEEFSQGHACGA--INVPYMNRGASGMSKNPDFLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA 120          
BLAST of FC925468 vs. ExPASy Swiss-Prot
Match: DIN1_RAPSA (Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.660e-22
Identity = 51/113 (45.13%), Postives = 75/113 (66.37%), Query Frame = 3
Query:  114 TVDVRAAKNLLESGGYGYLDVRTAEEFEEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 452
            +V VR A+ L ++G Y +LDVRT +EF  GH   A   N+PYM+    G VKNP FL++V S  ++ D +++GC+SG RSL A+ +LL AGF  V++  GG++ W +N L V+
Sbjct:   73 SVPVRVARELAQAG-YKHLDVRTPDEFSIGHPSRA--INVPYMYRVGSGMVKNPSFLRQVSSHFRKHDEIIIGCESGERSLMASTELLTAGFTGVTDIAGGYVPWTENELPVE 182          
The following BLAST results are available for this feature:
BLAST of FC925468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
STR16_ARATH3.922e-2350.88Thiosulfate sulfurtransferase OS=Arabidopsis thali... [more]
DIN1_RAPSA9.660e-2245.13Senescence-associated protein DIN1 OS=Raphanus sat... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YK01FM1 TF Citrus clementina cDNA clone KN0AAP8YK01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925468 ID=FC925468; Name=FC925468; organism=Citrus clementina; type=EST; length=670bp
TTCAAATATAACCTTTTAAGTTTGATATGGGTGTTTCCCGCAATTGGGTC
ACGTTTTTGCGTGGATTGTTTCTCCTCCTCCTTATCTGTCGTAGCTCTGG
AGCTGAAGTTATTACAGTTGATGTTCGAGCTGCTAAGAATCTGCTTGAAT
CTGGTGGGTACGGCTATCTGGATGTGAGGACGGCAGAAGAATTCGAGGAA
GGTCATGTGGATGCAGCAAAAATCTTCAACATTCCTTACATGTTCAACAC
TCCAGAAGGTAGAGTAAAAAATCCAGATTTCTTGAAGAAGGTTAGATCTC
TTTGCAAGGAGGAGGATCGTCTTGTAGTGGGCTGTCAAAGCGGAGCTAGA
TCTCTTCATGCGACGGCTGATCTTCTTGGCGCTGGCTTTAAGCATGTAAG
CAACTTTGGAGGTGGGCATATGGCTTGGGTTCAGAACGGATTAAAGGTGA
AGGCGCATGAAAAGCCAGCAGATCATCGATCTGACCTCTGATTAATCATG
ACTTGCCATTATTATCACCATGTATTACGCACAGTAGTAATGTCCAGAAA
ACGAACTTGTGGTGGCGCCGTCGTATTTAGTAATTTGTACAATATTTTTA
TTTTTGTTCGTTTGTTGCAGAAAAGGATGGGAATTGGATTAAAGTTATGC
TAAAAAAAAAAAAAAAAAAA
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