FC925471

Overview
NameFC925471
Unique NameFC925471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length775
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14640 contig Ccv1_Contig14640:1..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925471 vs. ExPASy Swiss-Prot
Match: YOOF_SCHPO (Uncharacterized hydroxylase C887.15c OS=Schizosaccharomyces pombe GN=SPBC887.15c PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.298e-26
Identity = 66/197 (33.50%), Postives = 95/197 (48.22%), Query Frame = 1
Query:  277 APIVVYWLYAGF-----YQMLPPLDNYRLHTKKEEDEKNSVPLSAXXXXXXXXXXXXXXXXXXXFMLTSKADASGITTQA---------SIP-----------------VQILQIIIAMFVMDTWQYFVHRYMHQNKFLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVIFFCFAVI 774
            +P+++YW+ + F     Y  LP  + YR+H  +E   +N VP  A                    M     +      Q          ++P                 V   Q   A F++D+WQYF HRY+H NK LY  IH+ HHRL VPYA+GALYNHP EGL+LDT G  +++L +G++ + AVIFF  + +
Sbjct:   20 SPVIIYWVASAFFGFLHYIELPVFEKYRIHPPEEIARRNRVPQMAVVKAVLFQQLCEVVVGIALAMFEGYPEPIDEAKQMLRYEAFFSKNLPALLQVAPFAPKLAYNFIVPAFQYFFAFFIIDSWQYFWHRYLHYNKKLYNMIHAHHHRLQVPYAMGALYNHPFEGLILDTFGAGVAYLAAGLSPQQAVIFFTLSTL 216          
BLAST of FC925471 vs. ExPASy Swiss-Prot
Match: SUR2_YEAST (Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces cerevisiae GN=SUR2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.872e-24
Identity = 65/198 (32.83%), Postives = 95/198 (47.98%), Query Frame = 1
Query:  250 VSDEAMGTFAPIVVYWLYAGFYQMLPPL---DNYRLHTKKEEDEKNS-----VPLSAXXXXXXXXXXXXXXXXXXXFMLTS---------KADASGITTQASI------PVQILQIIIAMFVMDTWQYFVHRYMHQNKFLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVIFFCFAVI 774
            +SD  +   AP+V YW  +G + ++      + YR+H  +E  ++N      V L                       +T          +AD   I   A+I       +  L+I      +DTWQYF+HR MH NK LY+  HS HH L VPYA GAL+N+P+EG LLDTLG  ++  ++ +T R  +I F FA +
Sbjct:   46 MSDGVLALVAPVVAYWALSGIFHVIDTFHLAEKYRIHPSEEVAKRNKASRMHVFLEVILQHIIQTIVGLIFMHFEPIYMTGFEENAMWKLRADLPRIIPDAAIYYGYMYGMSALKIFAGFLFVDTWQYFLHRLMHMNKTLYKWFHSVHHELYVPYAYGALFNNPVEGFLLDTLGTGIAMTLTHLTHREQIILFTFATM 243          
The following BLAST results are available for this feature:
BLAST of FC925471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YOOF_SCHPO1.298e-2633.50Uncharacterized hydroxylase C887.15c OS=Schizosacc... [more]
SUR2_YEAST7.872e-2432.83Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YK03FM1 TF Citrus clementina cDNA clone KN0AAP8YK03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925471 ID=FC925471; Name=FC925471; organism=Citrus clementina; type=EST; length=775bp
CACAACTGTCACAATTGTTTCTTCCTGTTCCCCGATTGGTTGATTCAAAA
ATCAAGCGGCTCAAAAGCTAGATAGATCTGAATGTCACTCTCATTCTCTG
CCATTTCAAGGTCATTTTGCGTATCTGCTGAGGTGAACGCAAAGCATTCA
GCGTTAGCTCTTAGACAATAGATGAAGGTTGAAATTTGAGCTGGATTGAT
TATTTTTTGCGTGTAAATTGGATCAACAATGGTGTTCTGGGAAGGATATG
TGAGTGATGAAGCAATGGGGACATTTGCTCCAATAGTAGTGTATTGGTTA
TATGCAGGGTTTTATCAAATGTTACCACCTTTGGATAATTACAGGTTACA
TACTAAAAAGGAGGAAGATGAGAAGAACTCAGTGCCACTTTCTGCTGTGG
TCAAGGGTGTTTTGCTTCAACAGCTCGTTCAGGCAACAGTTGCACAGTTA
CTTTTCATGTTGACCTCGAAGGCAGACGCATCCGGCATCACAACCCAGGC
ATCGATTCCTGTGCAGATTCTGCAGATTATCATCGCGATGTTTGTCATGG
ATACATGGCAGTACTTTGTGCACCGATATATGCATCAGAACAAATTCTTG
TATCGTCATATCCACTCTCAGCACCATAGGCTGGTTGTTCCTTATGCAAT
CGGCGCCCTTTACAATCACCCACTTGAGGGACTTTTGCTCGACACTTTGG
GTGGAGCCCTCTCTTTTCTTGTCTCGGGAATGACTGCACGAACAGCCGTG
ATATTTTTCTGCTTTGCTGTGATTA
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