FC925472

Overview
NameFC925472
Unique NameFC925472
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1413 contig Ccv1_Contig1413:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC925472 vs. ExPASy Swiss-Prot
Match: WIT2_ARATH (WPP domain-interacting tail-anchored protein 2 OS=Arabidopsis thaliana GN=WIT2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = 2 
Query:  359 MTVLTRVDLDLAYSSEKXXXXXXXXXXXXARGDDLETLVMENSDVSATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVDVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSEL 733
            + +LT++++D AY+SEK            A  +DLE   M   D S  S EKAL +DLL GIL+SE++EV+ +LD +  +IVD  +KISSCKH   +      +E KL +   SLK+S+  VSE+
Sbjct:   24 LRMLTKLEIDSAYTSEKLMNLHVLLMHLLAWDNDLEG--MGTLDSSPASFEKALTFDLLCGILESEVKEVDEVLDVLEAQIVDTSYKISSCKHGNYIV-----IEGKLGESAESLKQSRGQVSEI 141
[Close]
BLAST of FC925472 vs. ExPASy Swiss-Prot
Match: WIT1_ARATH (WPP domain-interacting tail-anchored protein 1 OS=Arabidopsis thaliana GN=WIT1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 56/170 (32.94%), Postives = 79/170 (46.47%), Query Frame = 2 
Query:  257 DDTCIGNPEPDKGCLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKXXXXXXXXXXXXARGDDLETLVME----------NSDVSATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVDVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELK 736
            +D+ +  P   K    E    +G  +   Q+     VLT+V+LD A+ SEK             R +D E+ V +          N D    S EKAL +DLL  IL+SE++E+E LL  +  EI      IS  +H  E F     +E KL+D E SL +  E V E+K
Sbjct:   16 NDSLVPEPSSTKESFFEDLSLTG-QVMNPQLSSAGEVLTKVELDFAFVSEKLVNLSLLTMQLGTRENDFESFVSKKEEDEEEPSSNVDDDDDSAEKALEFDLLSSILNSEVKELESLLGFLQNEIQSARVMISPFQHDGEAFL---DLEGKLNDTEQSLGQLMEQVVEMK 181
The following BLAST results are available for this feature:
BLAST of FC925472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WIT2_ARATH1.910e-1641.60WPP domain-interacting tail-anchored protein 2 OS=... [more]
WIT1_ARATH8.305e-1232.94WPP domain-interacting tail-anchored protein 1 OS=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YF02FM1 TF Citrus clementina cDNA clone KN0AAP11YF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925472 ID=FC925472; Name=FC925472; organism=Citrus clementina; type=EST; length=737bp
CGCAGTAAGCAATCTCCACTTGTCCTGACTCTGAAAACAAGACAACTACC
CCTCCGGCTCATTTTAGACGCCCCCAGACCCAGTCAACTGATCACGGGAA
CTCAACGGTATCATGAAATGAGAGGTCGTTAAAAAGAGTTTTGCGAACTA
TCTCTTGTCTGAATCTGTGATCCCAACACAACCCTTTGAAGATATTTGCA
TAATTAAGGCTGCTTAACCAAAGAATTGATCAATGGGTATGAATGAACAA
GCTGTTGATGACACGTGCATTGGAAATCCAGAGCCAGACAAAGGTTGTTT
ACATGAAGTTACTTTATCAAGCGGAATTGACATGCAAGAGAAACAGATAG
ACTGTACTATGACAGTTTTAACTAGAGTAGACTTGGACTTGGCATATTCA
TCCGAGAAGTTGGTAAATTTGCATGTACTTCTGATGTATCTTTTGGCAAG
GGGGGATGATCTTGAGACATTGGTCATGGAGAATAGCGATGTTTCAGCAA
CCTCCATTGAGAAGGCATTGGTATATGATCTTTTATTTGGTATTTTAGAT
TCTGAGTTGAGAGAGGTGGAAAGATTATTGGATACTATCCATGTGGAGAT
TGTTGATGTCCATCATAAAATATCCTCCTGCAAACATTTGAGAGAAGTAT
TTACTATAATGGAGAAGATGGAGAAGAAATTGCATGATTGTGAAGGATCA
TTAAAGGAGTCTCAAGAGCATGTTTCCGAGTTGAAGA
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