FC925473

Overview
NameFC925473
Unique NameFC925473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3813 contig Ccv1_Contig3813:2..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925473 vs. ExPASy Swiss-Prot
Match: ALIS2_ARATH (Putative ALA-interacting subunit 2 OS=Arabidopsis thaliana GN=ALIS2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.743e-31
Identity = 62/97 (63.92%), Postives = 79/97 (81.44%), Query Frame = 2
Query:    2 NDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPVS 292
            +D+QL    + S TS CEPE+++ +G PIVPCGLIAWS+FNDT+TFSR + +L V++N IAWKSDR+HKFGK V+P NFQNGTLIGGA L+  IP+S
Sbjct:  139 SDQQLLHGLEYSHTSSCEPEESS-NGLPIVPCGLIAWSMFNDTFTFSRERTKLNVSRNNIAWKSDREHKFGKNVYPINFQNGTLIGGAKLDPKIPLS 234          
BLAST of FC925473 vs. ExPASy Swiss-Prot
Match: ALIS5_ARATH (ALA-interacting subunit 5 OS=Arabidopsis thaliana GN=ALIS5 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.116e-29
Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 2
Query:    2 NDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPVS 292
            ND QL+   +  +   C PED    G+PIVPCGL+AWSLFNDTY+FSRN +QL VNK GI+WKSDR++KFGK VFP NFQ G  IGG  LN S P+S
Sbjct:  142 NDAQLRSPKEEHDVKTCAPEDNV-GGEPIVPCGLVAWSLFNDTYSFSRNSQQLLVNKKGISWKSDRENKFGKNVFPKNFQKGAPIGGGTLNISKPLS 237          
BLAST of FC925473 vs. ExPASy Swiss-Prot
Match: ALIS4_ARATH (Putative ALA-interacting subunit 4 OS=Arabidopsis thaliana GN=ALIS4 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.168e-29
Identity = 59/96 (61.46%), Postives = 71/96 (73.96%), Query Frame = 2
Query:    5 DEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPVS 292
            D QL+      ET  C PEDT   G+PIVPCGL+AWSLFNDTY F+RN ++L VNK  I+WKSDR+ KFGK VFP NFQ G+LIGG  L++ IP+S
Sbjct:  146 DGQLRSPKDEHETKSCAPEDTL-GGQPIVPCGLVAWSLFNDTYDFTRNNQKLPVNKKDISWKSDRESKFGKNVFPKNFQKGSLIGGKSLDQDIPLS 240          
BLAST of FC925473 vs. ExPASy Swiss-Prot
Match: ALIS1_ARATH (ALA-interacting subunit 1 OS=Arabidopsis thaliana GN=ALIS1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.043e-28
Identity = 59/97 (60.82%), Postives = 71/97 (73.20%), Query Frame = 2
Query:    2 NDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPVS 292
            +D QL+     ++   C+PED    G+PIVPCGLIAWSLFNDTY  SRN + LTVNK GIAWKSD++HKFGK VFP NFQ G L GGA L+ + P+S
Sbjct:  143 SDSQLRSVKDENQIDACKPEDDF-GGQPIVPCGLIAWSLFNDTYVLSRNNQGLTVNKKGIAWKSDKEHKFGKNVFPKNFQKGNLTGGASLDPNKPLS 238          
BLAST of FC925473 vs. ExPASy Swiss-Prot
Match: ALIS3_ARATH (ALA-interacting subunit 3 OS=Arabidopsis thaliana GN=ALIS3 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.484e-28
Identity = 58/97 (59.79%), Postives = 70/97 (72.16%), Query Frame = 2
Query:    2 NDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPVS 292
            +D QL+     ++ S C+PED    G+PIVPCGLIAWSLFNDTY  SRN   L VNK GIAWKSD++HKFG +VFP NFQ G + GGA L+  IP+S
Sbjct:  142 SDSQLRSTKYENQISACKPEDDV-GGQPIVPCGLIAWSLFNDTYALSRNNVSLAVNKKGIAWKSDKEHKFGNKVFPKNFQKGNITGGATLDPRIPLS 237          
The following BLAST results are available for this feature:
BLAST of FC925473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ALIS2_ARATH5.743e-3163.92Putative ALA-interacting subunit 2 OS=Arabidopsis ... [more]
ALIS5_ARATH4.116e-2961.86ALA-interacting subunit 5 OS=Arabidopsis thaliana ... [more]
ALIS4_ARATH9.168e-2961.46Putative ALA-interacting subunit 4 OS=Arabidopsis ... [more]
ALIS1_ARATH2.043e-2860.82ALA-interacting subunit 1 OS=Arabidopsis thaliana ... [more]
ALIS3_ARATH3.484e-2859.79ALA-interacting subunit 3 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YK04FM1 TF Citrus clementina cDNA clone KN0AAP8YK04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925473 ID=FC925473; Name=FC925473; organism=Citrus clementina; type=EST; length=713bp
AAATGATGAGCAGTTGAAAAAACGGAGTAAAACAAGTGAAACATCTCAGT
GTGAGCCCGAAGATACCACCCCAGATGGAAAGCCCATTGTCCCTTGTGGC
CTTATTGCTTGGAGTTTGTTTAACGATACATACACTTTTTCCCGCAACAA
GAGACAGTTGACAGTGAACAAGAACGGTATCGCATGGAAGAGTGATAGGG
ATCACAAGTTTGGCAAAGAAGTTTTTCCTAGTAACTTCCAAAATGGGACT
CTGATAGGTGGTGCACATCTTAATGAATCCATACCAGTAAGTCTTTTACC
GCTTCATATCTGATAAAATGTAGGTATACATTTGAGAACTCATGATAATT
AACAGTTCTGGATTCGTTTAAATTGGGTGTTTTAATGATCTTGAAAAATT
AGATGCAAACTTTAGGAGGACTTTTATCAGGGCCTAAAAATCCCAGATTT
ATTTTTTAAAATTTTTTTATATTTGTTTAACAAAATTTATAGTTTTTAAA
TTTTCTATTATTAAGATTGGGTTTCAAAAGTTGGACCTAAAGGTTTAAAG
TTTCAAATATGTGTAAAAGGTGGGCTAAATAAATATAATTTATTTAAAAA
AACATATATTTTCACTCTTTTTTTTTTCCGTAAAATCGGGGCTTATCAAG
TCATTAGCTACCCTTTGTGGAAGCTCCAATTAAGCCATTAACTATTGCTT
AAAATGGTTCTTT
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