FC926003

Overview
NameFC926003
Unique NameFC926003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2706 contig Ccv1_Contig2706:66..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926003 vs. ExPASy Swiss-Prot
Match: CSLA2_ARATH (Glucomannan 4-beta-mannosyltransferase 2 OS=Arabidopsis thaliana GN=CSLA2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.155e-40
Identity = 77/108 (71.30%), Postives = 92/108 (85.19%), Query Frame = 1
Query:  304 MAQISPKFFIPESFQVSREDIAGQIGLIWELLKAPLIVPLLKLGVYICLAMSLMLFMERVYMGIVIILVKLFWPKPEKRYNWQPIEDDVELGSSNFPVVLIQIPMFNE 627
            M  +SPKF +PE+F   R +I GQ+G+IWEL+KAP+IVPLL+L VYICL MS+ML  ERVYMGIVI+LVKLFW KP+KRY ++PI DD ELGSSNFPVVL+QIPMFNE
Sbjct:    1 MDGVSPKFVLPETFDGVRMEITGQLGMIWELVKAPVIVPLLQLAVYICLLMSVMLLCERVYMGIVIVLVKLFWKKPDKRYKFEPIHDDEELGSSNFPVVLVQIPMFNE 108          
BLAST of FC926003 vs. ExPASy Swiss-Prot
Match: CSLA9_ARATH (Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis thaliana GN=CSLA9 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.202e-31
Identity = 64/99 (64.65%), Postives = 84/99 (84.85%), Query Frame = 1
Query:  331 IPESFQVSREDIAGQIGLIWELLKAPLIVPLLKLGVYICLAMSLMLFMERVYMGIVIILVKLFWPKPEKRYNWQPIEDDVELGSSNFPVVLIQIPMFNE 627
            IP+SF   R+DI  Q+ ++ + ++APLIVP L+LGVYICL MS+MLF+ERVYMGIVI LVKLF  KP+KR+ ++PI+DD+ELG+S +P+VLIQIPMFNE
Sbjct:   10 IPDSFMGYRDDITMQMSMVLDQIRAPLIVPALRLGVYICLTMSVMLFVERVYMGIVISLVKLFGRKPDKRFKYEPIKDDIELGNSAYPMVLIQIPMFNE 108          
BLAST of FC926003 vs. ExPASy Swiss-Prot
Match: CSLA7_ARATH (Probable mannan synthase 7 OS=Arabidopsis thaliana GN=CSLA7 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.745e-25
Identity = 51/90 (56.67%), Postives = 72/90 (80.00%), Query Frame = 1
Query:  358 EDIAGQIGLIWELLKAPLIVPLLKLGVYICLAMSLMLFMERVYMGIVIILVKLFWPKPEKRYNWQPIEDDVELGSSNFPVVLIQIPMFNE 627
            EDI  +IGL W+L++A ++VP+ K  V +CL MS+M F+E +YMGIV++ VKLF  KPEK Y W+ +EDDVE GS+++P+VL+QIPM+NE
Sbjct:   41 EDIIARIGLWWQLIRAVVVVPVFKFLVLLCLVMSVMFFVEVMYMGIVVLYVKLFKRKPEKFYKWEAMEDDVECGSASYPMVLVQIPMYNE 130          
BLAST of FC926003 vs. ExPASy Swiss-Prot
Match: CSLA3_ARATH (Probable mannan synthase 3 OS=Arabidopsis thaliana GN=CSLA3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1
Query:  349 VSREDIAGQIGLIWELLKAPLIVPLLKLGVYICLAMSLMLFMERVYMGIVIILVKLFWPKPEKRYNWQPI-EDDVELGSSNFPVVLIQIPMFNE 627
            V R  I G+I  IW+  +  + +P+LK  V ICL MSL+LF+ERVYM IV++ VKL    PEK + W+PI +DD+EL ++N+P+VLIQIPM+NE
Sbjct:   38 VVRSGIIGEIIYIWKQTRIFVFIPILKCLVTICLVMSLLLFIERVYMSIVVVFVKLLRRTPEKVHKWEPINDDDLELANTNYPMVLIQIPMYNE 131          
BLAST of FC926003 vs. ExPASy Swiss-Prot
Match: CSLA1_ORYSJ (Glucomannan 4-beta-mannosyltransferase 1 OS=Oryza sativa subsp. japonica GN=CSLA1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.545e-21
Identity = 48/81 (59.26%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  388 WELLKAPLIVPLLKLGVYICLAMSLMLFMERVYMGIVIILVKLFWPKPEKRYNWQPI-EDDVELGSSNFPVVLIQIPMFNE 627
            W  ++AP+IVPLL+L V +CL MS++LF+ER+YM +VI  VK+   +P++RY   PI +DD ELG+S FPVVLIQIPMFNE
Sbjct:   15 WSQVRAPVIVPLLRLAVAVCLTMSVLLFLERMYMAVVISGVKILRRRPDRRYRCDPIPDDDPELGTSAFPVVLIQIPMFNE 95          
BLAST of FC926003 vs. ExPASy Swiss-Prot
Match: CSLA9_ORYSJ (Probable mannan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLA9 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.777e-20
Identity = 50/93 (53.76%), Postives = 67/93 (72.04%), Query Frame = 1
Query:  373 QIGLIWELLKAPLIVPLLKLGVYICLAMSLMLFMERVYMGIVIILVKLFWPKPEKRYNWQPI------EDDVELGSSN--FPVVLIQIPMFNE 627
            QI  +WE +KAP++VPLL+L V  CLAMS+MLF+E+VYM +V++ V LF  +P++RY   PI       DD EL  +N  FP+VLIQIPM+NE
Sbjct:   11 QIAAMWEQVKAPVVVPLLRLSVAACLAMSVMLFVEKVYMSVVLVGVHLFGRRPDRRYRCDPIVAAGADNDDPELADANAAFPMVLIQIPMYNE 103          
BLAST of FC926003 vs. ExPASy Swiss-Prot
Match: CSLAF_ARATH (Probable mannan synthase 15 OS=Arabidopsis thaliana GN=CSLA15 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.737e-20
Identity = 46/116 (39.66%), Postives = 73/116 (62.93%), Query Frame = 1
Query:  280 PCFALLEKMAQISPKFFIPESFQVSREDIAGQIGLIWELLKAPLIVPLLKLGVYICLAMSLMLFMERVYMGIVIILVKLFWPKPEKRYNWQPIEDDVELGSSNFPVVLIQIPMFNE 627
            P  +L +    +    F  E+ + S + +   +  +W   +   IVPL K  V +CL +SL++F+E VYM +V++ VKLF  KPEK Y W+ +++D+ELG  N+P+VL+QIPM+NE
Sbjct:    7 PLLSLHDLSLNLLSVMFHGETLKASVDGVGINMSTMWRETRNVFIVPLFKCIVVMCLIISLLVFVESVYMNLVVLYVKLFNRKPEKVYKWEAMQEDMELGHQNYPMVLVQIPMYNE 122          
BLAST of FC926003 vs. ExPASy Swiss-Prot
Match: CSLA1_ARATH (Probable mannan synthase 1 OS=Arabidopsis thaliana GN=CSLA1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.874e-17
Identity = 38/85 (44.71%), Postives = 60/85 (70.59%), Query Frame = 1
Query:  373 QIGLIWELLKAPLIVPLLKLGVYICLAMSLMLFMERVYMGIVIILVKLFWPKPEKRYNWQPIEDDVELGSSNFPVVLIQIPMFNE 627
            Q+  +W   ++ +++P+ K  V +CL +S+++F E  YM  VI+ VKLF  KP K Y W+ +++DVE+G  N+P+VLIQIPM+NE
Sbjct:   51 QLQYLWTKTRSVVLLPVFKGLVVMCLVLSIIVFFESFYMNFVILFVKLFKRKPHKVYKWEAMQEDVEVGPDNYPMVLIQIPMYNE 135          
BLAST of FC926003 vs. ExPASy Swiss-Prot
Match: CSLAA_ARATH (Probable mannan synthase 10 OS=Arabidopsis thaliana GN=CSLA10 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 1
Query:  412 IVPLLKLGVYICLAMSLMLFMERVYMGIVIILVKLFWPKPEKRYNWQPIEDDVELGSSNFPVVLIQIPMFNE 627
            IVPL K  V  CL +SL++F+E +YM +V++ VK+F  KPEK Y W+ +++D+ELG   +P+VL+QIPM+NE
Sbjct:   62 IVPLFKCLVAFCLIISLLVFIEGIYMNLVVLYVKVFERKPEKVYRWEAMQEDIELGHETYPMVLVQIPMYNE 133          
BLAST of FC926003 vs. ExPASy Swiss-Prot
Match: CSLA1_CYATE (Mannan synthase 1 OS=Cyamopsis tetragonoloba GN=ManS PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.690e-15
Identity = 39/80 (48.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:  388 WELLKAPLIVPLLKLGVYICLAMSLMLFMERVYMGIVIILVKLFWPKPEKRYNWQPIEDDVELGSSNFPVVLIQIPMFNE 627
            W+ ++AP+I+PLLKL V +C  MS+MLF+ERV M  VI++VK+   K   +YN + ++  +E  S  +P+VLIQIPM+NE
Sbjct:   24 WQSIRAPVIIPLLKLAVIVCSVMSIMLFVERVAMAAVILIVKVLRKKRYTKYNLEAMKQKLE-RSKKYPMVLIQIPMYNE 102          
The following BLAST results are available for this feature:
BLAST of FC926003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CSLA2_ARATH3.155e-4071.30Glucomannan 4-beta-mannosyltransferase 2 OS=Arabid... [more]
CSLA9_ARATH1.202e-3164.65Glucomannan 4-beta-mannosyltransferase 9 OS=Arabid... [more]
CSLA7_ARATH3.745e-2556.67Probable mannan synthase 7 OS=Arabidopsis thaliana... [more]
CSLA3_ARATH2.512e-2153.19Probable mannan synthase 3 OS=Arabidopsis thaliana... [more]
CSLA1_ORYSJ9.545e-2159.26Glucomannan 4-beta-mannosyltransferase 1 OS=Oryza ... [more]
CSLA9_ORYSJ2.777e-2053.76Probable mannan synthase 9 OS=Oryza sativa subsp. ... [more]
CSLAF_ARATH4.737e-2039.66Probable mannan synthase 15 OS=Arabidopsis thalian... [more]
CSLA1_ARATH2.874e-1744.71Probable mannan synthase 1 OS=Arabidopsis thaliana... [more]
CSLAA_ARATH8.362e-1751.39Probable mannan synthase 10 OS=Arabidopsis thalian... [more]
CSLA1_CYATE2.690e-1548.75Mannan synthase 1 OS=Cyamopsis tetragonoloba GN=Ma... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YA21FM1 TF Citrus clementina cDNA clone KN0AAP13YA21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926003 ID=FC926003; Name=FC926003; organism=Citrus clementina; type=EST; length=628bp
TCTGCTTCATTTTGGTAGAGAGAAAAAAAAAAAAAAACAGAGCAAGTATT
GGCTAAAAGACCAGTAAGTAAAGATCTTTCTGTTCTTCCCTTAACTAGGG
GGAAAAAAAATAGAGAAAGAGAGAAAGTCTTTTAATTTGCGTTTTAATTT
TTGCCCATTGTGTTCAAGTTTCCATGTAAAAGCCAAGATTTGTTCCAATT
CAATCACATTGTGAAAAATTTTCCTTCTTGTTTCTTGTTTTTAAACCAGC
ATTAGCCAAAAAAATCTCTTTATCGCCTCCCCTGTTTTGCTCTGCTAGAG
AAAATGGCTCAAATTTCACCAAAATTTTTCATACCAGAGTCATTCCAAGT
GTCAAGAGAGGACATTGCAGGCCAAATTGGTTTGATTTGGGAACTACTCA
AAGCCCCATTGATAGTCCCTTTGCTTAAACTCGGCGTCTACATTTGCTTG
GCCATGTCACTCATGCTCTTCATGGAAAGGGTTTACATGGGCATTGTTAT
AATCCTTGTTAAGCTGTTTTGGCCAAAACCTGAGAAGCGTTACAATTGGC
AACCTATTGAAGACGATGTCGAATTGGGCAGCTCTAATTTCCCCGTTGTT
CTTATTCAAATCCCAATGTTCAATGAAA
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