FC926004

Overview
NameFC926004
Unique NameFC926004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC926004_ssr80 microsatellite FC926004_ssr80:80..91. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig396 contig Ccv1_Contig396:207..931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_TRIEI (Transaldolase OS=Trichodesmium erythraeum (strain IMS101) GN=tal PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.560e-31
Identity = 70/156 (44.87%), Postives = 99/156 (63.46%), Query Frame = 3
Query:  270 EQEGQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            E  GQS W DNL R + +   L  +I   G+RG+TSNPAIF+KAI+ +  Y+      +++ K +   Y  LV KDI+DAC +F  +Y+ET G DGY+S+EV P +A DT+ T+  A   +  + R N+ IKIP T   +P++  VIS+GINVNVT
Sbjct:   10 ENLGQSIWMDNLSRNIIESGELKSMIGKKGIRGITSNPAIFEKAIAGNAIYDADIEAGIKASKSVIEIYESLVFKDIRDACDIFMPVYEETKGLDGYISIEVPPTIAKDTESTISEAIRYYTAIGRENLMIKIPGTPEGLPAVTRVISEGINVNVT 165          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_THIDA (Transaldolase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tal PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.253e-30
Identity = 73/153 (47.71%), Postives = 98/153 (64.05%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            GQS W DNL R +     L  +IA  GV GVTSNP+IFQ A+++S  Y D    L +   D+E  Y  LVI DI+DAC L   +++ + G DGYVS+EV+PRLA DT GTV+ A+ L  +V+RPN+ +K+P T   V + + +   GINVNVT
Sbjct:   11 GQSLWLDNLSRDLLRDGALAKMIAEDGVSGVTSNPSIFQNALATSPHYADDLARLRREEADVERRYEALVIPDIRDACDLLLPLFERSAGNDGYVSLEVAPRLAYDTSGTVDEARRLWSLVDRPNLLVKVPGTPEGVDAFETLTQLGINVNVT 163          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_FRAAA (Transaldolase OS=Frankia alni (strain ACN14a) GN=tal PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.460e-29
Identity = 70/153 (45.75%), Postives = 101/153 (66.01%), Query Frame = 3
Query:  279 GQSPWYDNLCRP---VTDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            G + W D++ R      +L  L+A+  V GVTSNP IFQKAI+SS+ YN+Q R+L   G D+  A   +   D+++AC +   +YD + G DG VS+EV PRLA + + TV  A+ L  +V+RPN++IKIPAT   +P+I E ++QGI+VNVT
Sbjct:   12 GVAVWLDDISRDRLRTGNLADLVANRSVVGVTSNPTIFQKAIASSDLYNEQLRDLKVRGVDVGEAVRAITAADVREACDVLRGVYDASGGVDGRVSLEVDPRLAHEAERTVAEARALWWLVDRPNLFIKIPATQDGLPAITETLAQGISVNVT 164          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL2_NOSP7 (Transaldolase 2 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=tal2 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.615e-28
Identity = 63/156 (40.38%), Postives = 101/156 (64.74%), Query Frame = 3
Query:  270 EQEGQSPWYDNLCRPVT---DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            +Q GQS W DNL R +    +L  ++ + G+ G+TSNPAIF+KAI+ +  Y+      V++G  I   Y  LV  DI++AC +   +Y+ ++  DGYVS+EV P +A DT+ T+  A+   + + R N+ IKIP T P +P++++VI++G+NVN+T
Sbjct:   10 KQYGQSIWMDNLTRDIIQSGELKDMVENQGISGITSNPAIFEKAIAGNAIYDADIEAGVRAGLPIYKIYESLVFADIRNACDILRPVYEASNRLDGYVSIEVPPTIAHDTEATISEARRYFQEIGRENLMIKIPGTEPGLPAVEQVIAEGMNVNIT 165          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_RENSM (Transaldolase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=tal PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.597e-28
Identity = 72/153 (47.06%), Postives = 92/153 (60.13%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            G S W D+L R       L  LI    V GVT+NP+IFQ AIS   +Y  Q  EL   G D+EAA +++  +D+ +AC  F  I   + G DG VS+EV PR A DTQGT+E AK LH  V + NV+IKIPAT   + +I E +  GI+VNVT
Sbjct:   12 GVSIWLDDLSRERLTSGSLQKLIDEKNVVGVTTNPSIFQAAISKGTSYEQQVSELAAQGADVEAAVFQITTQDVANACDFFAGIAVASKGVDGRVSIEVDPRKAWDTQGTIEEAKRLHAAVGKDNVHIKIPATLEGLEAITETLGAGISVNVT 164          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_FRASC (Transaldolase OS=Frankia sp. (strain CcI3) GN=tal PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.698e-28
Identity = 68/153 (44.44%), Postives = 99/153 (64.71%), Query Frame = 3
Query:  279 GQSPWYDNLCRP---VTDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            G + W D++ R      +L  L+ + GV GVTSNP IFQKAISSS+ Y++Q  +L   G D+  A   +   D++DAC +   +YD + G DG VS+EV PRLA + + T+  A+ L  +V+RPN++IKIPAT   + +I E ++QGI+VNVT
Sbjct:   12 GVAVWLDDISRDRLRTGNLAHLVENRGVVGVTSNPTIFQKAISSSDLYDEQLHDLAIRGVDVGEAVRAITAADVRDACDVLRGVYDASGGVDGRVSLEVDPRLAHEAERTLAEARALWWLVDRPNLFIKIPATRAGLSAITETLAQGISVNVT 164          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_MYCTU (Transaldolase OS=Mycobacterium tuberculosis GN=tal PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.136e-28
Identity = 67/153 (43.79%), Postives = 99/153 (64.71%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC +    ++++DG DG VS+EV PRLA +T+ T++ A  L K+V+RPN++IKIPAT   +P+I  V+++GI+VNVT
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLAHETEKTIQQAIELWKIVDRPNLFIKIPATKAGLPAISAVLAEGISVNVT 167          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_MYCTA (Transaldolase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=tal PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.136e-28
Identity = 67/153 (43.79%), Postives = 99/153 (64.71%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC +    ++++DG DG VS+EV PRLA +T+ T++ A  L K+V+RPN++IKIPAT   +P+I  V+++GI+VNVT
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLAHETEKTIQQAIELWKIVDRPNLFIKIPATKAGLPAISAVLAEGISVNVT 167          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_MYCBT (Transaldolase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=tal PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.136e-28
Identity = 67/153 (43.79%), Postives = 99/153 (64.71%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC +    ++++DG DG VS+EV PRLA +T+ T++ A  L K+V+RPN++IKIPAT   +P+I  V+++GI+VNVT
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLAHETEKTIQQAIELWKIVDRPNLFIKIPATKAGLPAISAVLAEGISVNVT 167          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_MYCBP (Transaldolase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tal PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.136e-28
Identity = 67/153 (43.79%), Postives = 99/153 (64.71%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC +    ++++DG DG VS+EV PRLA +T+ T++ A  L K+V+RPN++IKIPAT   +P+I  V+++GI+VNVT
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLAHETEKTIQQAIELWKIVDRPNLFIKIPATKAGLPAISAVLAEGISVNVT 167          
The following BLAST results are available for this feature:
BLAST of FC926004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
TAL_TRIEI1.560e-3144.87Transaldolase OS=Trichodesmium erythraeum (strain ... [more]
TAL_THIDA2.253e-3047.71Transaldolase OS=Thiobacillus denitrificans (strai... [more]
TAL_FRAAA1.460e-2945.75Transaldolase OS=Frankia alni (strain ACN14a) GN=t... [more]
TAL2_NOSP71.615e-2840.38Transaldolase 2 OS=Nostoc punctiforme (strain ATCC... [more]
TAL_RENSM3.597e-2847.06Transaldolase OS=Renibacterium salmoninarum (strai... [more]
TAL_FRASC4.698e-2844.44Transaldolase OS=Frankia sp. (strain CcI3) GN=tal ... [more]
TAL_MYCTU6.136e-2843.79Transaldolase OS=Mycobacterium tuberculosis GN=tal... [more]
TAL_MYCTA6.136e-2843.79Transaldolase OS=Mycobacterium tuberculosis (strai... [more]
TAL_MYCBT6.136e-2843.79Transaldolase OS=Mycobacterium bovis (strain BCG /... [more]
TAL_MYCBP6.136e-2843.79Transaldolase OS=Mycobacterium bovis (strain BCG /... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP5YE12FM1 TF Citrus clementina cDNA clone KN0AAP5YE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926004 ID=FC926004; Name=FC926004; organism=Citrus clementina; type=EST; length=725bp
CAAGGATCAACGCCTTTTTAATGGCGACCATTTTGAAGCTTACAAATCCA
GCTGTTTCTTCATCATCTTTGAAACCCAGATCATCATCATCCTCACTGCC
TAAATCTTTGATCAGCCTTCAAACCAAAACTGGGTTCAATTCAAAAGTTG
CATCTTCTCAGTTGACCCTCAGAAATAACCACCCTTTGAAGGCCTCTTTG
GTTGTGAAATGTTCCCAATCTGGTGGAAATGGAAGTAGTGCAAAGAGGAC
AACTCTTCATGATCTCTATGAGCAGGAAGGGCAGAGCCCTTGGTATGATA
ACCTTTGCCGCCCCGTCACAGATTTGCTTCCGCTCATTGCAAGTGGTGTT
AGAGGTGTTACCAGCAACCCTGCGATTTTCCAGAAAGCAATATCTTCATC
GAATGCTTACAATGATCAATTTAGGGAACTTGTACAATCTGGAAAAGATA
TTGAAGCTGCATATTGGGAACTTGTGATTAAGGACATTCAAGATGCATGC
AAACTTTTTGAGTCAATCTATGATGAAACCGATGGCGGTGATGGCTATGT
TTCTGTCGAAGTTTCTCCCAGACTCGCTGATGATACCCAAGGGACCGTGG
AGGCAGCAAAATGGCTTCACAAAGTGGTTAATCGCCCCAATGTATACATA
AAGATACCTGCCACAGCTCCTTGCGTTCCTTCTATCAAGGAAGTTATTTC
GCAGGGCATTAATGTCAATGTGACT
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