FC926005

Overview
NameFC926005
Unique NameFC926005
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC926005_ssr19 microsatellite FC926005_ssr19:19..34. BLAST: Citrus ESTs to Prunus persica proteins V1
FC926005_ssr36 microsatellite FC926005_ssr36:36..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10075 contig Ccv1_Contig10075:29..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: ATB40_ARATH (Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.022e-45
Identity = 101/187 (54.01%), Postives = 134/187 (71.66%), Query Frame = 1
Query:  106 NHQVEDNKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRKRN---TNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPSATIPTDMDTVDSPFY 657
            N+ V+D   NM  +SQ YP DV T   IV   GE  +PKRR++K      + +GG    +KRKLT EQ  +LEM FG+EHKLES+RKD+LAAELGLDPRQVAVWFQNRRAR K K++EE Y  LK +H+NVVV+K RLESEV  LKE+L  AE+EI++++E +EG S N+P ++    ++  ++PF+
Sbjct:    2 NYTVDDQ--NMAFISQLYP-DVYTQ--IVQPVGEVKQPKRRRKKTKGSVASADGGNGLFRKRKLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNSHDNVVVDKCRLESEVIQLKEQLYDAEREIQRLAERVEGGSSNSPISS-SVSVEANETPFF 182          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: ATB21_ARATH (Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana GN=ATHB-21 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.833e-42
Identity = 96/194 (49.48%), Postives = 136/194 (70.10%), Query Frame = 1
Query:  106 NHQVEDNKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRKRNTN----------GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPSATIPTDMDTVDSPFY 657
            N  V+D+  N++L+SQ YP+ V TP  +VPQQG  +KP RR+++++ +          GNG FR   KRKL+ EQ  +LE+ F ++HKLES+RKD+LA+ELGLDPRQVAVWFQNRRAR K K++E+ Y  LK A+E  VVEK RL+SEV  LKE+L  AE+EI+++++ +EG   N+P ++  T      +PF+
Sbjct:    3 NQNVDDH--NLLLISQLYPN-VYTP--LVPQQGGEAKPTRRRKRKSKSVVVAEEGENEGNGWFR---KRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTKLKNAYETTVVEKCRLDSEVIHLKEQLYEAEREIQRLAKRVEGTLSNSPISSSVTIEANHTTPFF 188          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: ATB53_ARATH (Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana GN=ATHB-53 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.236e-39
Identity = 95/199 (47.74%), Postives = 123/199 (61.81%), Query Frame = 1
Query:  136 MVLLSQFYPSDVLTPTG--IVPQQ---GEPSKPKRRQRKRNTNGNGGFRA---------LKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPSATI-------PTDMDTVDSPFYPGPF 669
            M+L SQ YP          I+  Q   GE SKP +R+RKR + G+              L+KRKLT EQ  +LE  FGNEHKLES RK+K+A ELGLDPRQVAVWFQNRRAR K KK+EE YA LK  H+NVV+ + +LES++  L E+LS A+ EI+K+SE +E +  N+ S+++       PTD +      Y  PF
Sbjct:   11 MMLGSQVYPYTTQPQNSHCIIVNQIDGGEESKPVKRRRKRRSKGSSATNEEDVAEIGGMLRKRKLTDEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDNVVLGQCQLESQILKLTEQLSEAQSEIRKLSERLEEMPTNSSSSSLSVEANNAPTDFELAPETNYNIPF 209          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX14_ORYSJ (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. japonica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.178e-29
Identity = 70/158 (44.30%), Postives = 104/158 (65.82%), Query Frame = 1
Query:  121 DNKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRK--RNTNGNGGFRAL-----KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKM 573
            + +    + + +  + +L  +G V  QGE  + +RR+R+  R   G GG   +     KKR+L+ EQ E+LE+ F  E KLE+ RK  LA+ELGLDP+QVAVWFQNRRAR K+K +EE ++ LK AH+  ++ K  LE+EV  LKE+L VAE+E++++
Sbjct:    6 EKQQQQQMFASYVDASLLAASGEV--QGERPRARRRRRRGARCVGGGGGGGEVDGGDPKKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLVVAEEEVRRL 161          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX14_ORYSI (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. indica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.178e-29
Identity = 70/158 (44.30%), Postives = 104/158 (65.82%), Query Frame = 1
Query:  121 DNKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRK--RNTNGNGGFRAL-----KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKM 573
            + +    + + +  + +L  +G V  QGE  + +RR+R+  R   G GG   +     KKR+L+ EQ E+LE+ F  E KLE+ RK  LA+ELGLDP+QVAVWFQNRRAR K+K +EE ++ LK AH+  ++ K  LE+EV  LKE+L VAE+E++++
Sbjct:    6 EKQQQQQMFASYVDASLLAASGEV--QGERPRARRRRRRGARCVGGGGGGGEVDGGDPKKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLVVAEEEVRRL 161          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX12_ORYSJ (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. japonica GN=HOX12 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 64/133 (48.12%), Postives = 90/133 (67.67%), Query Frame = 1
Query:  202 GEPSKPKRRQRKRN--------TNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMS 576
            GE  K ++R+R++            +GG    KKR+L+ EQA  LEM F  E KLE+ RK +LAAELGLD +QVAVWFQNRRAR K+K +EE +A L++AH+ VV++   LE+E+  LKE+L+  E+E  K++
Sbjct:   29 GEQKKARQRRRRKVKPEAAAALAGESGGDEQAKKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLADVEEEKAKLA 161          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX12_ORYSI (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. indica GN=HOX12 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 64/133 (48.12%), Postives = 90/133 (67.67%), Query Frame = 1
Query:  202 GEPSKPKRRQRKRN--------TNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMS 576
            GE  K ++R+R++            +GG    KKR+L+ EQA  LEM F  E KLE+ RK +LAAELGLD +QVAVWFQNRRAR K+K +EE +A L++AH+ VV++   LE+E+  LKE+L+  E+E  K++
Sbjct:   29 GEQKKARQRRRRKVKPEAAAALAGESGGDEQAKKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLADVEEEKAKLA 161          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.576e-20
Identity = 52/97 (53.61%), Postives = 68/97 (70.10%), Query Frame = 1
Query:  274 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKL 543
            KKR+LT EQ  LLE  F  E+KLE +RK +LA +LGL PRQVAVWFQNRRAR KTK++E  Y  LK+        ++++V++  +L SEV +L EKL
Sbjct:   68 KKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKL 164          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSJ (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. japonica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.278e-19
Identity = 59/133 (44.36%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  274 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPSATIPTDMDTVDSP 651
            KKR+LTAEQ ++LE  F  E+KLE +RK +LA  LG+ PRQVAVWFQNRRAR KTK++E  +  LK A       H  ++ +  RL ++V +L EKL   E               +  SATI T    VD P
Sbjct:   86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQDKE--------------TSPSSATITTAAQEVDQP 204          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSI (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. indica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.278e-19
Identity = 59/133 (44.36%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  274 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPSATIPTDMDTVDSP 651
            KKR+LTAEQ ++LE  F  E+KLE +RK +LA  LG+ PRQVAVWFQNRRAR KTK++E  +  LK A       H  ++ +  RL ++V +L EKL   E               +  SATI T    VD P
Sbjct:   86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQDKE--------------TSPSSATITTAAQEVDQP 204          
The following BLAST results are available for this feature:
BLAST of FC926005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
ATB40_ARATH3.022e-4554.01Homeobox-leucine zipper protein ATHB-40 OS=Arabido... [more]
ATB21_ARATH1.833e-4249.48Homeobox-leucine zipper protein ATHB-21 OS=Arabido... [more]
ATB53_ARATH3.236e-3947.74Homeobox-leucine zipper protein ATHB-53 OS=Arabido... [more]
HOX14_ORYSJ5.178e-2944.30Homeobox-leucine zipper protein HOX14 OS=Oryza sat... [more]
HOX14_ORYSI5.178e-2944.30Homeobox-leucine zipper protein HOX14 OS=Oryza sat... [more]
HOX12_ORYSJ3.142e-2648.12Homeobox-leucine zipper protein HOX12 OS=Oryza sat... [more]
HOX12_ORYSI3.142e-2648.12Homeobox-leucine zipper protein HOX12 OS=Oryza sat... [more]
HAT5_ARATH2.576e-2053.61Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]
HOX5_ORYSJ1.278e-1944.36Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX5_ORYSI1.278e-1944.36Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YA22FM1 TF Citrus clementina cDNA clone KN0AAP13YA22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926005 ID=FC926005; Name=FC926005; organism=Citrus clementina; type=EST; length=694bp
TACCAATTTACCCTATCCATATATATATATATATTCACACACACACACAC
ACACACACATATTTGAGAGAGATTTATGATCAGAGAAATGATCGTAACAA
ACACGAATCATCAAGTTGAAGATAACAAAAGTAATATGGTCTTGCTTTCC
CAGTTTTACCCTTCTGATGTTCTCACACCAACTGGAATCGTTCCACAACA
AGGGGAGCCGTCTAAGCCGAAGCGCAGGCAACGCAAACGGAATACTAACG
GAAACGGTGGCTTTCGTGCTTTGAAGAAGAGAAAGCTGACGGCTGAACAA
GCTGAGCTTCTTGAGATGCATTTTGGCAACGAACACAAGCTTGAATCTGA
CAGAAAAGACAAGCTCGCTGCTGAGCTCGGACTCGACCCTCGTCAAGTGG
CCGTGTGGTTTCAGAACCGGAGGGCTCGTGATAAGACTAAGAAGATTGAG
GAGACCTACGCTACCTTGAAGACCGCTCATGAAAATGTCGTCGTGGAGAA
AACCCGACTCGAGTCTGAGGTGGCAACGCTGAAAGAGAAGCTTTCAGTTG
CCGAGAAGGAGATTAAGAAAATGTCAGAGCTCATTGAAGGGATTTCACTC
AATAATCCGAGTGCCACGATCCCAACGGACATGGACACCGTGGACTCACC
GTTTTACCCTGGACCCTTTTGCTGGTAATCTTGGGTGGTTTGAT
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