FC926008

Overview
NameFC926008
Unique NameFC926008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2217 contig Ccv1_Contig2217:1..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926008 vs. ExPASy Swiss-Prot
Match: URIC2_CANLI (Uricase-2 isozyme 2 OS=Canavalia lineata PE=2 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 1.372e-97
Identity = 172/218 (78.90%), Postives = 195/218 (89.45%), Query Frame = 1
Query:    4 RVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGIYSAS 657
            RVRVARVW++K+G +F+VEW V ISLLSD + +YV DDNSDIVATDT+KNTVYAKAKEC E LSVE+FAILLAKHF SFY+QVT+AIV IVEKPWE VSVDGQ HEHGFKLGSERHT E  VQ+SG LQ+TSGIEGL+LLKTTKSGFEGFIRDKYTALP+T ERMLATEVT+ WRYSYES++++PQKPLYFT++YL VKKVL DTFFGPP  G+YS S
Sbjct:   19 RVRVARVWKTKKGGYFIVEWRVGISLLSDCVNSYVRDDNSDIVATDTMKNTVYAKAKECSEILSVEDFAILLAKHFISFYKQVTAAIVNIVEKPWERVSVDGQPHEHGFKLGSERHTAEAIVQKSGALQLTSGIEGLSLLKTTKSGFEGFIRDKYTALPETHERMLATEVTALWRYSYESLYSIPQKPLYFTDKYLEVKKVLADTFFGPPNVGVYSPS 236          
BLAST of FC926008 vs. ExPASy Swiss-Prot
Match: URIC1_CANLI (Uricase-2 isozyme 1 OS=Canavalia lineata PE=2 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 9.830e-96
Identity = 169/218 (77.52%), Postives = 193/218 (88.53%), Query Frame = 1
Query:    4 RVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGIYSAS 657
            RV+VARVW++K+G +F+VEW V  SLLSD + +YV DDNSDIVATDT+KNTVYAKAKEC E LSVE+FAILLAKHF SFY+QVT+AIV IVEKPWE VSVDGQ HEHGFKLGSERHT E  VQ+SG LQ+TSGIEGL+LLKTTKSGFEGFIRDKYTALP+T ERMLATEVT+ WRYSYES++++PQKPLYFT++YL VKKVL D FFGPP  G+YS S
Sbjct:   19 RVQVARVWKTKQGWYFIVEWRVGNSLLSDCVNSYVRDDNSDIVATDTMKNTVYAKAKECSEILSVEDFAILLAKHFISFYKQVTAAIVNIVEKPWERVSVDGQPHEHGFKLGSERHTAEAIVQKSGALQLTSGIEGLSLLKTTKSGFEGFIRDKYTALPETHERMLATEVTALWRYSYESLYSIPQKPLYFTDKYLEVKKVLADNFFGPPNVGVYSPS 236          
BLAST of FC926008 vs. ExPASy Swiss-Prot
Match: URIC_PHAVU (Uricase-2 OS=Phaseolus vulgaris GN=URIII PE=1 SV=2)

HSP 1 Score: 345.51 bits (885), Expect = 1.419e-94
Identity = 164/218 (75.23%), Postives = 193/218 (88.53%), Query Frame = 1
Query:    4 RVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGIYSAS 657
            RVRVARVWR+ +GRHF+VEW V I+L SD + +Y+ DDNSDIVATDT+KNTVYAKAKEC + LSVE+FAILLAKHF SFY++VT AIV IVEKPWE V VDGQ H+HGF LGSE+HTTE  VQ+SG+LQ+TSGIEGL++LKTT+SGFE FIR+KYTALPDT+ER+LATEVT+ WRYSYES++NLPQKPLYFT++YL VKKVL DTFFGPP  G+YS S
Sbjct:   19 RVRVARVWRTPQGRHFVVEWRVGITLFSDCVNSYLRDDNSDIVATDTMKNTVYAKAKECSDILSVEDFAILLAKHFVSFYKKVTGAIVNIVEKPWERVIVDGQPHQHGFTLGSEKHTTEAIVQKSGSLQLTSGIEGLSVLKTTQSGFENFIRNKYTALPDTRERILATEVTALWRYSYESLYNLPQKPLYFTDKYLEVKKVLADTFFGPPNRGVYSPS 236          
BLAST of FC926008 vs. ExPASy Swiss-Prot
Match: URIC1_SOYBN (Uricase-2 isozyme 1 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 345.51 bits (885), Expect = 1.419e-94
Identity = 164/218 (75.23%), Postives = 194/218 (88.99%), Query Frame = 1
Query:    4 RVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGIYSAS 657
            RVRVARVW++++G+HF+VEW V I+L SD + +Y+ DDNSDIVATDT+KNTVYAKAKEC + LS EEFAILLAKHF SFY++VT AIV IVEKPWE V+VDGQ HEHGFKLGSE+HTTE  VQ+SG+LQ+TSGIEGL++LKTT+SGF  FIRDKYTALPDT+ERM+ATEVT+ WRYSYES+++LPQKPLYFTE+Y  VKKVL DTFFGPPK G+YS S
Sbjct:   20 RVRVARVWKTRQGQHFIVEWRVGITLFSDCVNSYLRDDNSDIVATDTMKNTVYAKAKECSDILSAEEFAILLAKHFVSFYQKVTGAIVNIVEKPWERVTVDGQPHEHGFKLGSEKHTTEAIVQKSGSLQLTSGIEGLSVLKTTQSGFVNFIRDKYTALPDTRERMVATEVTALWRYSYESLYSLPQKPLYFTEKYQEVKKVLADTFFGPPKGGVYSPS 237          
BLAST of FC926008 vs. ExPASy Swiss-Prot
Match: URIC2_SOYBN (Uricase-2 isozyme 2 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 5.964e-93
Identity = 162/218 (74.31%), Postives = 191/218 (87.61%), Query Frame = 1
Query:    4 RVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGIYSAS 657
            RVRVARVW++++G+HF+VEW V I+L SD + +Y+ DDNSDIVATDT+KNTVYAKAKEC + LS E+FAILLAKHF SFY++VT AIV IVEKPWE V VDGQ HEHGFKLGSE+HTTE  VQ+SG+LQ+TSGIEGL++LKTT+SGF  FIRDKYTALPDT+ER+LATEVT+ WRYSYES ++LPQKPLYFTE+Y  VKKVL DTFFGPP  G+YS S
Sbjct:   20 RVRVARVWKTRQGQHFVVEWRVGITLFSDCVNSYLRDDNSDIVATDTMKNTVYAKAKECSDILSAEDFAILLAKHFVSFYKKVTGAIVNIVEKPWERVIVDGQPHEHGFKLGSEKHTTEAIVQKSGSLQLTSGIEGLSVLKTTQSGFVNFIRDKYTALPDTRERILATEVTALWRYSYESQYSLPQKPLYFTEKYQEVKKVLADTFFGPPNGGVYSPS 237          
BLAST of FC926008 vs. ExPASy Swiss-Prot
Match: URIC_ARATH (Uricase OS=Arabidopsis thaliana GN=At2g26230 PE=1 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 5.406e-86
Identity = 156/220 (70.91%), Postives = 184/220 (83.64%), Query Frame = 1
Query:    1 ARVRVARVWR-SKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGIYSAS 657
            ARVRV RVWR + +G H  VEWNVSISLLS  + +Y  DDNSDIVATDTIKNTVY KAKEC ++LSVEEFAIL+ KHF SFY QV +AIV I+EKPWE VS+DG+ H HGFKLGSE HTTE  V++SG L +TSGI GLALLKTT+SGFE F+RDKYT LP+T+ERMLATEV ++WRYSYESV ++P K LYF+E+++ VKKVLMDTFFGPP+ G+YS S
Sbjct:   17 ARVRVGRVWRHAHDGSHHFVEWNVSISLLSHCLSSYRLDDNSDIVATDTIKNTVYVKAKECGDRLSVEEFAILIGKHFCSFYPQVFTAIVNIIEKPWERVSIDGKPHLHGFKLGSENHTTEARVEKSGALNLTSGIGGLALLKTTQSGFERFVRDKYTILPETRERMLATEVNASWRYSYESVASIPTKGLYFSEKFMDVKKVLMDTFFGPPETGVYSPS 236          
BLAST of FC926008 vs. ExPASy Swiss-Prot
Match: URIC_RABIT (Uricase OS=Oryctolagus cuniculus GN=UOX PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.224e-29
Identity = 79/205 (38.54%), Postives = 114/205 (55.61%), Query Frame = 1
Query:   46 HFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGF-KLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGIYSAS 657
            H + E   S+ L   S   YV  DNSDI+ TDTIKNTV+  AK  K   S+E FA+ + +HF S +  V    V + E PW+ +  +G  H H F    +  H  EV  + SG   + SGI+ L +LKTT+SGFEGFI+D++T LP+ ++R  AT+V   WRY +        + + F   +  V+  +++ F GP  +G YS S
Sbjct:   34 HSIKEVATSVQLTLSSKQDYVYGDNSDIIPTDTIKNTVHVLAK-FKGIKSIEVFAMNICEHFLSSFNHVVRVHVYVEEVPWKRLEKNGVQHVHAFIHTPTGTHFCEVEQRRSGLPVIHSGIKDLKVLKTTQSGFEGFIKDQFTTLPEVKDRCFATQVYCKWRYQH-------SQDVDFEATWDIVRDTVLEKFAGPYDKGEYSPS 230          
BLAST of FC926008 vs. ExPASy Swiss-Prot
Match: URIC_DICDI (Uricase OS=Dictyostelium discoideum GN=uox PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.224e-29
Identity = 75/184 (40.76%), Postives = 110/184 (59.78%), Query Frame = 1
Query:    1 ARVRVARVWRSKEGRHFMVEWNVSISLLSDSII-AYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSV-DGQLHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESV 546
            ARVRV RV++     H + +++  + L        Y+  DNS +VATDT+KNTVY  A++ +E  S+EE+ ILL KHF + Y  V    V + E  W  +   +G+   H F+   E H+  VT     +  + SGI+ L ++KTT+SGFEGF RDKYT+L +T++R+ AT VT+ W Y+  SV
Sbjct:   12 ARVRVLRVFKGPNEYHKVFDFDCRVLLRGAEFSETYLTGDNSKVVATDTMKNTVYVIAQK-EEFKSLEEYGILLGKHFLATYSWVNGVEVVMRENQWRRIKTSNGKEQAHSFQRDREIHSVTVTSSRDKSPVVVSGIDDLLIMKTTQSGFEGFHRDKYTSLKETKDRVFATVVTANWTYNTLSV 194          
BLAST of FC926008 vs. ExPASy Swiss-Prot
Match: URIC_CANFA (Uricase OS=Canis familiaris GN=UOX PE=2 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.727e-29
Identity = 80/205 (39.02%), Postives = 113/205 (55.12%), Query Frame = 1
Query:   46 HFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLG-SERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGIYSAS 657
            H + E   S+ L   S   YV  DNSDI+ TDTIKNTV+  AK  K   S+E FA+ + +HF S +  V  A V + E PW+    +G  H H F    +  H  EV    SG   + SGI+ L +LKTT+SGFEGFI+D++T LP+ ++R  AT+V   WRY          + + F   +  V+ ++++ F GP  +G YS S
Sbjct:   38 HSIKEVATSVQLTLSSKKDYVYGDNSDIIPTDTIKNTVHVLAK-FKGIKSIETFAMNICEHFLSSFNHVIRAQVYVEEVPWKRFEKNGVKHVHAFIHNPTGTHFCEVEQMRSGPPVIHSGIKDLKVLKTTQSGFEGFIKDQFTTLPEVKDRCFATKVYCKWRYH-------QGRDVDFEATWDTVRDIVLEKFAGPYDKGEYSPS 234          
BLAST of FC926008 vs. ExPASy Swiss-Prot
Match: URIC_RAT (Uricase OS=Rattus norvegicus GN=Uox PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.562e-29
Identity = 79/205 (38.54%), Postives = 113/205 (55.12%), Query Frame = 1
Query:   46 HFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGF-KLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGIYSAS 657
            H + E   S+ L   S   Y+  DNSDI+ TDTIKNTV+  AK  K   S+E FA+ + +HF S +  VT A V + E PW+    +G  H H F    +  H  +V    +G   + SGI+ L +LKTT+SGFEGFI+D++T LP+ ++R  AT+V   WRY          + + F   + AV+ +++  F GP   G YS S
Sbjct:   38 HSIKEVATSVQLTLRSKKDYLHGDNSDIIPTDTIKNTVHVLAK-FKGIKSIETFAMNICEHFLSSFSHVTRAHVYVEEVPWKRFEKNGVKHVHAFIHTPTGTHFCDVEQVRNGPPIIHSGIKDLKVLKTTQSGFEGFIKDQFTTLPEVKDRCFATQVYCKWRYQ--------NRDVDFEATWGAVRDIVLKKFAGPYDRGEYSPS 233          
The following BLAST results are available for this feature:
BLAST of FC926008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
URIC2_CANLI1.372e-9778.90Uricase-2 isozyme 2 OS=Canavalia lineata PE=2 SV=1[more]
URIC1_CANLI9.830e-9677.52Uricase-2 isozyme 1 OS=Canavalia lineata PE=2 SV=1[more]
URIC_PHAVU1.419e-9475.23Uricase-2 OS=Phaseolus vulgaris GN=URIII PE=1 SV=2[more]
URIC1_SOYBN1.419e-9475.23Uricase-2 isozyme 1 OS=Glycine max PE=1 SV=2[more]
URIC2_SOYBN5.964e-9374.31Uricase-2 isozyme 2 OS=Glycine max PE=1 SV=1[more]
URIC_ARATH5.406e-8670.91Uricase OS=Arabidopsis thaliana GN=At2g26230 PE=1 ... [more]
URIC_RABIT1.224e-2938.54Uricase OS=Oryctolagus cuniculus GN=UOX PE=2 SV=1[more]
URIC_DICDI1.224e-2940.76Uricase OS=Dictyostelium discoideum GN=uox PE=3 SV... [more]
URIC_CANFA2.727e-2939.02Uricase OS=Canis familiaris GN=UOX PE=2 SV=3[more]
URIC_RAT3.562e-2938.54Uricase OS=Rattus norvegicus GN=Uox PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP5YE16FM1 TF Citrus clementina cDNA clone KN0AAP5YE16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926008 ID=FC926008; Name=FC926008; organism=Citrus clementina; type=EST; length=659bp
GCTCGAGTGAGAGTTGCAAGAGTTTGGCGAAGCAAAGAAGGCCGCCATTT
TATGGTCGAATGGAACGTCAGCATCAGCTTGCTCTCCGATTCCATCATCG
CCTACGTTGACGACGATAACTCCGATATCGTCGCCACCGATACCATAAAA
AATACTGTTTACGCTAAAGCTAAGGAATGTAAAGAGCAACTTTCAGTCGA
GGAATTTGCTATTTTACTCGCCAAGCACTTTACGTCCTTTTATCGCCAGG
TTACTAGTGCCATAGTGAGGATAGTGGAAAAGCCATGGGAATGTGTATCC
GTGGATGGGCAACTGCATGAGCATGGTTTCAAACTTGGATCTGAGAGGCA
CACAACAGAGGTTACAGTACAGGAGTCTGGTACTTTGCAGATGACTTCTG
GCATTGAAGGACTGGCTTTGCTGAAGACAACCAAGTCAGGTTTTGAAGGG
TTTATTAGGGACAAATACACGGCTCTGCCTGATACTCAAGAAAGGATGCT
GGCAACAGAGGTCACTAGTACGTGGAGGTATTCTTATGAATCTGTCTTTA
ACCTCCCACAGAAACCGCTTTACTTCACAGAGAGATACCTGGCTGTGAAA
AAAGTTCTGATGGATACTTTCTTTGGTCCTCCGAAAGAGGGAATATACAG
TGCGTCTGT
back to top