FC926015

Overview
NameFC926015
Unique NameFC926015
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC926015 vs. ExPASy Swiss-Prot
Match: PAP_CITUN (Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.408e-65
Identity = 131/154 (85.06%), Postives = 131/154 (85.06%), Query Frame = 1
Query:   64 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILV 525
            MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAA                       SPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILV
Sbjct:    1 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAADDDEWGPEKEKEGGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILV 154          
BLAST of FC926015 vs. ExPASy Swiss-Prot
Match: CHRC_CUCSA (Chromoplast-specific carotenoid-associated protein, chromoplast OS=Cucumis sativus GN=CHRC PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 82/154 (53.25%), Postives = 97/154 (62.99%), Query Frame = 1
Query:   64 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSV-RISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWIL 522
            MA +SQ NQ PCKTL+ NPP  Q TSKPS+ P+ S+   +R+ A KS +S++   + R  VL                            P E +EI  LKKALVDSFYGTDRGL  + +TRAEIVELITQLE+KNPTPAPTEALTLLN KWIL
Sbjct:    1 MAFVSQFNQLPCKTLALNPPQPQLTSKPSVFPIASIGATARAAAGKSLISVRPAFKVRA-VLNDDEWGEDKDEKYGDDSSVAVAEKEEEKPLEPSEIYKLKKALVDSFYGTDRGLRVSRDTRAEIVELITQLESKNPTPAPTEALTLLNGKWIL 153          
BLAST of FC926015 vs. ExPASy Swiss-Prot
Match: LIPC_SOLDE (Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.013e-30
Identity = 75/156 (48.08%), Postives = 92/156 (58.97%), Query Frame = 1
Query:   64 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXXS---PKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWIL 522
            MASIS  NQ PCKTL     +++ TSK S LP++S        +   +S++ FT  +P    +A                            PKE +EI+ LKK L DS YGT+RGL+A+SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL
Sbjct:    1 MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFLSKTEQHRSISVKEFTNPKPKFTAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWIL 156          
BLAST of FC926015 vs. ExPASy Swiss-Prot
Match: LIPC_SOLTU (Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29
Identity = 75/156 (48.08%), Postives = 91/156 (58.33%), Query Frame = 1
Query:   64 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXXS---PKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWIL 522
            MASIS  NQ PCKTL     +++ TSK S LP++S            +S++ FT  +P    +A                            PKE +EI+ LKK L DS YGT+RGL+A+SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL
Sbjct:    1 MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFPSKTELHRSISVKEFTNPKPKFTAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWIL 156          
BLAST of FC926015 vs. ExPASy Swiss-Prot
Match: PAP2_BRACM (Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.071e-22
Identity = 67/153 (43.79%), Postives = 88/153 (57.52%), Query Frame = 1
Query:   64 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWIL 522
            MA++   NQFPCKT  Q+  +++  SKP   P + V +S    + SF   + F  +R     R                         + + V E + LK++LVDS YGTDRGL+A+SETRAEI +LITQLE+KNPTPAPT+AL LLN KWIL
Sbjct:    1 MATVQFFNQFPCKTRVQSSANSKPLSKP---PSSLVPMSALTRRPSFPPGE-FAVSRSDFRVRVIDAEDELDPETSEGGGSALLMAEEAIESVEETEVLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTDALFLLNGKWIL 149          
BLAST of FC926015 vs. ExPASy Swiss-Prot
Match: PAP1_ARATH (Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.071e-22
Identity = 66/157 (42.04%), Postives = 85/157 (54.14%), Query Frame = 1
Query:   64 MASISQTNQFPCKTLSQNPPHNQFTSK-PSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXXSPK---EVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWIL 522
            MA++    QFPCKTL+ +  + +  SK P +LP+NS+     +         G +  RP    RA                        + K    V E + LK++L DS YGTDRGL+ +S+TRAEI ELITQLE+KNPTPAP EAL LLN KWIL
Sbjct:    1 MATVPLFTQFPCKTLNPSSSNTKHQSKSPILLPINSINRRSEI---------GVSVHRPDFKIRATDIDDEWGQDGVERVFASSSTVSVADKAIESVEETERLKRSLADSLYGTDRGLSVSSDTRAEISELITQLESKNPTPAPNEALFLLNGKWIL 148          
BLAST of FC926015 vs. ExPASy Swiss-Prot
Match: PAP2_ARATH (Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.754e-21
Identity = 65/154 (42.21%), Postives = 88/154 (57.14%), Query Frame = 1
Query:   64 MASISQTNQFPCKTLSQNPPHNQFTSKPSIL-PLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWIL 522
            MA++  + QF C+T     P+++  SKP  L P+ S+ I R +     +++      R +   RA                          ++V E + LK++LVDS YGTDRGL+A+SETRAEI +LITQLE+KNPTPAPTEAL LLN KWIL
Sbjct:    1 MATVQLSTQFSCQTRVSISPNSKSISKPPFLVPVTSI-IHRPMISTGGIAVS----PRRVFKVRATDTGEIGSALLAAEEAI---------EDVEETERLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTEALFLLNGKWIL 140          
BLAST of FC926015 vs. ExPASy Swiss-Prot
Match: PAP2_ORYSJ (Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 1
Query:  343 TEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWIL 522
            +E+  LK  L ++ YGT+RGL A+SETRAE+VELITQLEA+NPTPAPTEALTLLN KWIL
Sbjct:   90 SEVAELKAKLKEALYGTERGLRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWIL 149          
BLAST of FC926015 vs. ExPASy Swiss-Prot
Match: PAP1_BRACM (Plastid lipid-associated protein 1, chloroplastic OS=Brassica campestris GN=PAP1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.896e-18
Identity = 59/150 (39.33%), Postives = 75/150 (50.00%), Query Frame = 1
Query:   85 NQFPCKTLSQNPPHNQFTSK-PSILPLNSVRISRSLAKKSFLSIQGFTRAR--PLVLTRAAXXXXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILV 525
            +QF CKT   +   + F SK P +LP+N +    ++ +  F            P    R                         + +   E + LK+ L  S YGTDRGL+A+SETRAEI ELITQLE+KNP PAP EAL LLN KWILV
Sbjct:    9 SQFTCKTPITSSSTSSFQSKSPILLPINPINRRIAVHRHDFKVRASDVNDEWGPDSKGRGGDVDDEWGPEIGLNSSVAEKVAEEAIESAEETERLKRVLAGSLYGTDRGLSASSETRAEISELITQLESKNPNPAPNEALFLLNGKWILV 158          
BLAST of FC926015 vs. ExPASy Swiss-Prot
Match: PAP3_ORYSJ (Probable plastid-lipid-associated protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP3 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  331 PKEVTEIDN-------LKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILV 525
            P  V E DN       LK+ LVD+ YG+D G  A+SE R E++EL+TQLEA NPTP P +A  LL   WIL+
Sbjct:  133 PPPVPEEDNEEERREELKRCLVDTVYGSDLGFRASSEVRGEVLELVTQLEATNPTPEPVQATHLLAGNWILI 204          
The following BLAST results are available for this feature:
BLAST of FC926015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PAP_CITUN4.408e-6585.06Plastid-lipid-associated protein, chloroplastic OS... [more]
CHRC_CUCSA5.256e-3453.25Chromoplast-specific carotenoid-associated protein... [more]
LIPC_SOLDE6.013e-3048.08Light-induced protein, chloroplastic OS=Solanum de... [more]
LIPC_SOLTU1.026e-2948.08Light-induced protein, chloroplastic OS=Solanum tu... [more]
PAP2_BRACM2.071e-2243.79Plastid lipid-associated protein 2, chloroplastic ... [more]
PAP1_ARATH2.071e-2242.04Probable plastid-lipid-associated protein 1, chlor... [more]
PAP2_ARATH1.754e-2142.21Probable plastid-lipid-associated protein 2, chlor... [more]
PAP2_ORYSJ1.815e-1873.33Probable plastid-lipid-associated protein 2, chlor... [more]
PAP1_BRACM6.896e-1839.33Plastid lipid-associated protein 1, chloroplastic ... [more]
PAP3_ORYSJ1.943e-1251.39Probable plastid-lipid-associated protein 3, chlor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP5YE23FM1 TF Citrus clementina cDNA clone KN0AAP5YE23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926015 ID=FC926015; Name=FC926015; organism=Citrus clementina; type=EST; length=689bp
GTTTTTCTAGTTTCTCTGTTGGTGAAAACTGTGTGTTGTAACTGTGTGTT
TTTGGAAAAGCTAATGGCTTCAATATCTCAAACCAACCAGTTCCCGTGCA
AGACTCTTTCACAAAACCCACCACACAATCAGTTCACCTCGAAGCCTTCA
ATTCTTCCTTTGAACTCGGTTCGAATTTCACGGAGTCTCGCCAAGAAATC
ATTTCTTTCAATCCAAGGATTCACTCGGGCCAGGCCGCTGGTTCTAACTC
GGGCTGCCGATGATGATGAGTGGGGCCCGGAGAAGGAGAAGGAGGAAGGT
GGCGCTCTGGCGGTGGCAGAGGAGGAGAGCCCAAAAGAAGTTACAGAGAT
TGATAATTTGAAGAAAGCGCTTGTGGATTCGTTTTATGGGACCGATCGTG
GATTGAATGCCACAAGTGAGACGAGGGCTGAGATCGTTGAGCTTATTACG
CAGCTTGAGGCTAAGAATCCAACCCCGGCTCCCACCGAGGCCTTAACTCT
GCTAAATGCCAAATGGATTCTTGTGTAAGTTTTCATGTTTCATGTTTCAT
TTTTTATTTGTTTGCTGAAAAATTTTATGGAAACGAATAGATTTTGGAAA
GTTTCGTATTTGCGTTTTTTTTTTGGTAATGACTAACAAAATTGGACCTT
TGGTCAATCGAAGCTTATTTAATCCATTTAGGAAATTAT
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