FC926023

Overview
NameFC926023
Unique NameFC926023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length438
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC926023_ssr373 microsatellite FC926023_ssr373:373..384. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig872 contig Ccv1_Contig872:265..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.322e-28
Identity = 63/95 (66.32%), Postives = 70/95 (73.68%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 286
            FKAD+PGL+          G ILQISGER+KEQEEK D+WHRVERSSGKFLRRFRLPDNAK EQ+KASMENGVLTVT            +I+ISG
Sbjct:   67 FKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.667e-28
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 286
            FKADLPGL+          G++LQISGER+KE+EEKNDKWHRVERSSGKFLRRFRLP+NAKV++VKA+M NGV+TVT            AI+ISG
Sbjct:   63 FKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 7.401e-28
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 286
            FKAD+PGL+          G ILQISGERS+EQEEK+DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT            +I+ISG
Sbjct:   65 FKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 9.666e-28
Identity = 62/95 (65.26%), Postives = 69/95 (72.63%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 286
            FKADLPGLR          G ILQISGERS E EEKNDKWHRVERSSGKF RRFRLP+NAK+E++KASMENGVL+VT            +I+ISG
Sbjct:   63 FKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.262e-27
Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 286
            FKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKASMENGVLTVT            AIEISG
Sbjct:   55 FKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.649e-27
Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 286
            FKAD+PGL+          G +LQISGERSKEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT            +I+++G
Sbjct:   67 FKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.812e-27
Identity = 61/95 (64.21%), Postives = 70/95 (73.68%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 286
            FKAD+PGL+           ++LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAKVEQVKASMENGVLTVT            AIEISG
Sbjct:   67 FKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.673e-27
Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 286
            FKADLPGL+           R+LQISGERS E+E+KND+WHRVERSSGKFLRRFRLP+NAK+++VKASMENGVLTVT            +IEISG
Sbjct:   64 FKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.673e-27
Identity = 60/95 (63.16%), Postives = 70/95 (73.68%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 286
            FKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA MENGVLTVT            AIEISG
Sbjct:   56 FKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.265e-27
Identity = 60/95 (63.16%), Postives = 70/95 (73.68%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 286
            FKAD+PGL+          GR+LQISGER+ E+E+KND WHRVERSSGK +RRFRLP+NAKV+QVKASMENGVLTVT            AI+ISG
Sbjct:   59 FKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
The following BLAST results are available for this feature:
BLAST of FC926023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HS17A_ORYSJ3.322e-2866.3217.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_DAUCA5.667e-2864.2117.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS177_ORYSJ7.401e-2865.2617.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS17C_ARATH9.666e-2865.2617.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS16C_ORYSJ1.262e-2764.2116.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS181_ORYSJ1.649e-2763.1618.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP16_SOYBN2.812e-2764.2118.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA3.673e-2764.2118.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HS16B_ORYSJ3.673e-2763.1616.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HSP11_SOYBN6.265e-2763.1617.3 kDa class I heat shock protein OS=Glycine max... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YP17FM1 TF Citrus clementina cDNA clone KN0AAP11YP17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926023 ID=FC926023; Name=FC926023; organism=Citrus clementina; type=EST; length=438bp
ATTCAAAGCTGATCTTCCAGGGCTGAGGAAAGAAGAAGTAAAAGTTGAGG
TTGAAGAGGGCAGGATTCTGCAGATAAGCGGAGAGAGGAGCAAGGAGCAG
GAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAGCAGTGGCAAGTT
CCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGAACAGGTTAAGG
CCAGCATGGAGAATGGTGTGCTCACAGTCACCGTTCCTAAACAGGAGGAG
AAGAAACCTGAAGTTAAGGCTATTGAGATCTCTGGCTAAGTGATAACTGT
AAATGTTTTCAAGATAGTGTCTTTGGTTTGCTAATAAATTTGGTACGAAA
GCAAAGCCCTTGTGTGTTTGTATGTGTGTGTGTGTTTGTTTTCCTCCCCT
CCCCCTGTTTAATTTGATGTGATTATGTTTGTGTGTTT
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