FC926429

Overview
NameFC926429
Unique NameFC926429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2285 contig Ccv1_Contig2285:2..458. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: NACB_AJECN (Nascent polypeptide-associated complex subunit beta OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=EGD1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.713e-23
Identity = 56/110 (50.91%), Postives = 76/110 (69.09%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDDV-LIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 326
            V  I AIEEVN+FK+D  +I F  PKV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q  Q    G  A    +DDDDE+P+LV GE FE+  E
Sbjct:   49 VQPIQAIEEVNMFKEDGNVIHFAAPKVHASVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKGEGGEDAKKDDDDDDDEIPDLVEGENFESKVE 158          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: BT3L4_XENTR (Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.080e-22
Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDD-VLIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEE 329
            VN I  IEEVN+ KDD  +I F NPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   E++DD+VPELV G   EA+  E
Sbjct:   48 VNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: BT3L4_XENLA (Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.080e-22
Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDD-VLIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEE 329
            VN I  IEEVN+ KDD  +I F NPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   E++DD+VPELV G   EA+  E
Sbjct:   48 VNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: BT3L4_BOVIN (Transcription factor BTF3 homolog 4 OS=Bos taurus GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.105e-22
Identity = 53/113 (46.90%), Postives = 82/113 (72.57%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDD-VLIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEEKTD 338
            VN I  IEEVN+ KDD  +I F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++ T  P   ++++D+VP+LV  E F+ A++ + +
Sbjct:   48 VNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKTPKPEDIDEEEDDVPDLV--ENFDEASKNEAN 158          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: NACB_ASPOR (Nascent polypeptide-associated complex subunit beta OS=Aspergillus oryzae GN=egd1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.361e-22
Identity = 54/109 (49.54%), Postives = 77/109 (70.64%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDDV-LIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 326
            V  I AIEEVN+FK+D  +I F  PKV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q    N   GA   ++DD+D++P+LV GE FE+  E
Sbjct:   89 VQPIQAIEEVNMFKEDGNVIHFGAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ-AGAEGKKDDDEDDIPDLVEGENFESNVE 196          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: BT3L4_PONAB (Transcription factor BTF3 homolog 4 OS=Pongo abelii GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.361e-22
Identity = 53/113 (46.90%), Postives = 81/113 (71.68%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDD-VLIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEEKTD 338
            VN I  IEEVN+ KDD  +I F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   +++DD+VP+LV  E F+ A++ + +
Sbjct:   48 VNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLV--ENFDEASKNEAN 158          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: BT3L4_MOUSE (Transcription factor BTF3 homolog 4 OS=Mus musculus GN=Btf3l4 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.361e-22
Identity = 53/113 (46.90%), Postives = 81/113 (71.68%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDD-VLIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEEKTD 338
            VN I  IEEVN+ KDD  +I F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   +++DD+VP+LV  E F+ A++ + +
Sbjct:   48 VNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLV--ENFDEASKNEAN 158          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: BT3L4_HUMAN (Transcription factor BTF3 homolog 4 OS=Homo sapiens GN=BTF3L4 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.361e-22
Identity = 53/113 (46.90%), Postives = 81/113 (71.68%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDD-VLIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEEKTD 338
            VN I  IEEVN+ KDD  +I F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   +++DD+VP+LV  E F+ A++ + +
Sbjct:   48 VNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLV--ENFDEASKNEAN 158          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: NACB_PHANO (Nascent polypeptide-associated complex subunit beta OS=Phaeosphaeria nodorum GN=EGD1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.002e-22
Identity = 54/111 (48.65%), Postives = 74/111 (66.67%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDDV-LIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQED--DDDEVPELVAGETFEAAAE 326
            V  I AIEEVN+FK D  +I F  PKV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q      G       +D  DDD++PELVAG+ FE+  E
Sbjct:   48 VQPIQAIEEVNMFKSDGNVIHFSAPKVHASVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKEKGEDGDKKDDDDEDDDDIPELVAGDNFESKTE 158          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: NACB_NEOFI (Nascent polypeptide-associated complex subunit beta OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=egd1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.002e-22
Identity = 53/109 (48.62%), Postives = 77/109 (70.64%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDDV-LIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 326
            V  I AIEEVN+FK+D  +I F  PKV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q     AGT     +++D+D++P+LV GE FE+  E
Sbjct:   77 VQPIQAIEEVNMFKEDGNVIHFAAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKQAGTEG--KKDEDEDDIPDLVEGENFESNVE 183          
The following BLAST results are available for this feature:
BLAST of FC926429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
NACB_AJECN3.713e-2350.91Nascent polypeptide-associated complex subunit bet... [more]
BT3L4_XENTR1.080e-2250.91Transcription factor BTF3 homolog 4 OS=Xenopus tro... [more]
BT3L4_XENLA1.080e-2250.91Transcription factor BTF3 homolog 4 OS=Xenopus lae... [more]
BT3L4_BOVIN4.105e-2246.90Transcription factor BTF3 homolog 4 OS=Bos taurus ... [more]
NACB_ASPOR5.361e-2249.54Nascent polypeptide-associated complex subunit bet... [more]
BT3L4_PONAB5.361e-2246.90Transcription factor BTF3 homolog 4 OS=Pongo abeli... [more]
BT3L4_MOUSE5.361e-2246.90Transcription factor BTF3 homolog 4 OS=Mus musculu... [more]
BT3L4_HUMAN5.361e-2246.90Transcription factor BTF3 homolog 4 OS=Homo sapien... [more]
NACB_PHANO7.002e-2248.65Nascent polypeptide-associated complex subunit bet... [more]
NACB_NEOFI7.002e-2248.62Nascent polypeptide-associated complex subunit bet... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP5YO09FM1 TF Citrus clementina cDNA clone KN0AAP5YO09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926429 ID=FC926429; Name=FC926429; organism=Citrus clementina; type=EST; length=457bp
GAGTGAATGCTATTTTTGCAATTGAGGAAGTTAACATTTTCAAGGATGAC
GTCCTTATTCAGTTCTTAAATCCCAAAGTACAAGCTTCAATTGCTGCCAA
CACATGGGTAGTTAGTGGTGCCCCACAAACCAAGAAGTTGCAGGATATTC
TCCCTGGAATTATCAATCAATTGGGGCCAGATAATTTGGACAACCTGAGG
AAGTTGGCGGAACAGTTTCAGAAGCAAGCACCTAATGCAGGAACTGGTGC
ACCCACGACTCAAGAGGACGACGACGATGAGGTCCCAGAGCTTGTGGCAG
GCGAGACGTTTGAAGCTGCCGCAGAGGAGAAAACAGACAAACCTGACGCT
GCCTCTTAGAGAGTTTTATCTAGAGGGACTTTGTGTTATTCAATATATTT
TCTATGCTTTTTGAGTTTTTATTTCACTTTTCCGAGTCCACTTTCTCTTG
TTTTATC
back to top