FC926430

Overview
NameFC926430
Unique NameFC926430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length153
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC926430 vs. ExPASy Swiss-Prot
Match: THIC_CORGL (Thiamine biosynthesis protein thiC OS=Corynebacterium glutamicum GN=thiC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.191e-17
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 2
Query:    2 DLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSE 148
            D+AKGHP A+ WDDA+SKARFEFRW DQFALSLDP TA+++HDETLP+E
Sbjct:  466 DVAKGHPGARAWDDAMSKARFEFRWNDQFALSLDPDTAIAYHDETLPAE 514          
BLAST of FC926430 vs. ExPASy Swiss-Prot
Match: THIC_CORGB (Thiamine biosynthesis protein thiC OS=Corynebacterium glutamicum (strain R) GN=thiC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.191e-17
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 2
Query:    2 DLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSE 148
            D+AKGHP A+ WDDA+SKARFEFRW DQFALSLDP TA+++HDETLP+E
Sbjct:  466 DVAKGHPGARAWDDAMSKARFEFRWNDQFALSLDPDTAIAYHDETLPAE 514          
BLAST of FC926430 vs. ExPASy Swiss-Prot
Match: THIC_COREF (Thiamine biosynthesis protein thiC OS=Corynebacterium efficiens GN=thiC PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.191e-17
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 2
Query:    2 DLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSE 148
            D+AKGHP A+ WDDA+SKARFEFRW DQFALSLDP TA+++HDETLP+E
Sbjct:  466 DVAKGHPGARAWDDAMSKARFEFRWNDQFALSLDPDTAIAYHDETLPAE 514          
BLAST of FC926430 vs. ExPASy Swiss-Prot
Match: THIC_CORDI (Thiamine biosynthesis protein thiC OS=Corynebacterium diphtheriae GN=thiC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.191e-17
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 2
Query:    2 DLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSE 148
            D+AKGHP A+ WDDA+SKARFEFRW DQFALSLDP TA+++HDETLP+E
Sbjct:  478 DVAKGHPGARAWDDAMSKARFEFRWHDQFALSLDPDTAIAYHDETLPAE 526          
BLAST of FC926430 vs. ExPASy Swiss-Prot
Match: THIC_BACP2 (Thiamine biosynthesis protein thiC OS=Bacillus pumilus (strain SAFR-032) GN=thiC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.191e-17
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:    2 DLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEG 151
            DLAKGHP AQ  DDALSKARFEFRW DQF LSLDP  AM+FHDETLP+EG
Sbjct:  485 DLAKGHPAAQKRDDALSKARFEFRWRDQFNLSLDPERAMAFHDETLPAEG 534          
BLAST of FC926430 vs. ExPASy Swiss-Prot
Match: THIC_CORJK (Thiamine biosynthesis protein thiC OS=Corynebacterium jeikeium (strain K411) GN=thiC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.108e-17
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 2
Query:    2 DLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSE 148
            D+AKGHP A  WDDA+SKARFEFRW DQFALSLDP TA ++HDETLP+E
Sbjct:  486 DVAKGHPGAHEWDDAMSKARFEFRWHDQFALSLDPDTAQAYHDETLPAE 534          
BLAST of FC926430 vs. ExPASy Swiss-Prot
Match: THIC_BACHD (Thiamine biosynthesis protein thiC OS=Bacillus halodurans GN=thiC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.284e-17
Identity = 41/50 (82.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:    2 DLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEG 151
            DLAKGHP AQ  DDALSKARFEFRW DQF LSLDP  AM FHDETLP+EG
Sbjct:  488 DLAKGHPGAQKRDDALSKARFEFRWRDQFNLSLDPERAMEFHDETLPAEG 537          
BLAST of FC926430 vs. ExPASy Swiss-Prot
Match: THIC_STRGG (Thiamine biosynthesis protein thiC OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=thiC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.068e-16
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 2
Query:    2 DLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSE 148
            DLAKGHP AQ WDDALS ARFEFRW DQF L+LDP TA  FHDETLP+E
Sbjct:  499 DLAKGHPGAQEWDDALSDARFEFRWEDQFNLALDPDTAREFHDETLPAE 547          
BLAST of FC926430 vs. ExPASy Swiss-Prot
Match: THIC_STRCO (Thiamine biosynthesis protein thiC OS=Streptomyces coelicolor GN=thiC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.068e-16
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 2
Query:    2 DLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSE 148
            DLAKGHP AQ WDDALS ARFEFRW DQF L+LDP TA  FHDETLP+E
Sbjct:  499 DLAKGHPGAQEWDDALSDARFEFRWEDQFNLALDPDTAREFHDETLPAE 547          
BLAST of FC926430 vs. ExPASy Swiss-Prot
Match: THIC_STRAW (Thiamine biosynthesis protein thiC OS=Streptomyces avermitilis GN=thiC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.068e-16
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 2
Query:    2 DLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSE 148
            DLAKGHP AQ WDDALS ARFEFRW DQF L+LDP TA  FHDETLP+E
Sbjct:  494 DLAKGHPGAQEWDDALSDARFEFRWEDQFNLALDPDTAREFHDETLPAE 542          
The following BLAST results are available for this feature:
BLAST of FC926430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
THIC_CORGL3.191e-1777.55Thiamine biosynthesis protein thiC OS=Corynebacter... [more]
THIC_CORGB3.191e-1777.55Thiamine biosynthesis protein thiC OS=Corynebacter... [more]
THIC_COREF3.191e-1777.55Thiamine biosynthesis protein thiC OS=Corynebacter... [more]
THIC_CORDI3.191e-1777.55Thiamine biosynthesis protein thiC OS=Corynebacter... [more]
THIC_BACP23.191e-1782.00Thiamine biosynthesis protein thiC OS=Bacillus pum... [more]
THIC_CORJK7.108e-1777.55Thiamine biosynthesis protein thiC OS=Corynebacter... [more]
THIC_BACHD9.284e-1782.00Thiamine biosynthesis protein thiC OS=Bacillus hal... [more]
THIC_STRGG2.068e-1679.59Thiamine biosynthesis protein thiC OS=Streptomyces... [more]
THIC_STRCO2.068e-1679.59Thiamine biosynthesis protein thiC OS=Streptomyces... [more]
THIC_STRAW2.068e-1679.59Thiamine biosynthesis protein thiC OS=Streptomyces... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YK20FM1 TF Citrus clementina cDNA clone KN0AAP13YK20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926430 ID=FC926430; Name=FC926430; organism=Citrus clementina; type=EST; length=153bp
CGATTTAGCCAAAGGCCACCCACTTGCTCAGACATGGGATGATGCATTAA
GCAAGGCAAGATTTGAATTCCGATGGATGGACCAATTTGCATTGTCTTTG
GACCCCATGACTGCAATGTCCTTCCATGATGAAACCCTGCCATCAGAAGG
TGC
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