FC926435

Overview
NameFC926435
Unique NameFC926435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1688 contig Ccv1_Contig1688:1..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926435 vs. ExPASy Swiss-Prot
Match: SNR25_HUMAN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.047e-16
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 2
Query:  179 LTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 424
            L  ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG    V V+ SATV DLK AI++ V   ++   G +HISW
Sbjct:    8 LAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISW 89          

HSP 2 Score: 35.4242 bits (80), Expect = 5.047e-16
Identity = 13/36 (36.11%), Postives = 22/36 (61.11%), Query Frame = 3
Query:  501 HVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFV 608
            +VW  Y L+   +KL ++   L+D G+RN  +V F+
Sbjct:   91 YVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFI 126          
BLAST of FC926435 vs. ExPASy Swiss-Prot
Match: SNR25_MOUSE (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.475e-15
Identity = 33/79 (41.77%), Postives = 52/79 (65.82%), Query Frame = 2
Query:  188 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 424
            ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG    V V+ +ATV DLK AI++ V   ++   G +HISW
Sbjct:    2 VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISW 80          

HSP 2 Score: 35.4242 bits (80), Expect = 2.475e-15
Identity = 13/36 (36.11%), Postives = 22/36 (61.11%), Query Frame = 3
Query:  501 HVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFV 608
            +VW  Y L+   +KL ++   L+D G+RN  +V F+
Sbjct:   82 YVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFI 117          
BLAST of FC926435 vs. ExPASy Swiss-Prot
Match: SNR25_BOVIN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.475e-15
Identity = 33/79 (41.77%), Postives = 52/79 (65.82%), Query Frame = 2
Query:  188 LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFDVAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISW 424
            ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG    V V+ +ATV DLK AI++ V   ++   G +HISW
Sbjct:    2 VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISW 80          

HSP 2 Score: 35.4242 bits (80), Expect = 2.475e-15
Identity = 13/36 (36.11%), Postives = 22/36 (61.11%), Query Frame = 3
Query:  501 HVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFV 608
            +VW  Y L+   +KL ++   L+D G+RN  +V F+
Sbjct:   82 YVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFI 117          
The following BLAST results are available for this feature:
BLAST of FC926435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SNR25_HUMAN5.047e-1642.68U11/U12 small nuclear ribonucleoprotein 25 kDa pro... [more]
SNR25_MOUSE2.475e-1541.77U11/U12 small nuclear ribonucleoprotein 25 kDa pro... [more]
SNR25_BOVIN2.475e-1541.77U11/U12 small nuclear ribonucleoprotein 25 kDa pro... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP13YK23FM1 TF Citrus clementina cDNA clone KN0AAP13YK23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926435 ID=FC926435; Name=FC926435; organism=Citrus clementina; type=EST; length=655bp
CAAAGCTCCAGCTTTTCATCACACATCGTGTGCGAGAGCCAGACGCGGTA
GAAGATCTGGGACAGAGAGGAATTGAAGAATTATGGAATCCTCTTCCTCT
TGCGGTGCAAAGGAGGAAGAAGTTGAAGTTGGAGATTATAACAGCAGCAC
CATGAAGAAAGCCAGATTGCATTCAACGTTGACTGCCCTCCTCGACGATC
CCATACTTGCTGATGTCCCCAAGAAACCAACGTTATCGGACGTTGACACC
CTTATCAGCCTCGAAATGGGTAGTGCCATGCGCATCTCCATCCTCAAATT
AGACGGCACTTCCTTTGATGTAGCGGTGATGAATTCGGCTACAGTGAAAG
ACCTCAAGCTTGCAATCAAGAAGAAAGTTAACGACATGGAGCAGTCCAAC
CTGGGTCATCGCCATATCTCTTGGCAAGTTTTTATTGCTCCTTCCATTCA
GTCTTGTTCCTCAGTGTAACTATTTTTGTGGTTGTGGGGTCTATAGGAAG
CATGTCTGGGCGAATTATTGCTTGTCTCACCAAAATCAGAAGCTACTTGA
TGAAAACTCTGCCCTTCAAGATTGTGGCGTACGTAACAATTCCCAGGTGC
AGTTTGTACCCTTTGTCTTGTCAAAAGGTTCGGGGAAGCATTCAAAGAGG
AGGAA
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