FC927891

Overview
NameFC927891
Unique NameFC927891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2118 contig Ccv1_Contig2118:1..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC927891 vs. ExPASy Swiss-Prot
Match: PSDE_ARATH (26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis thaliana GN=RPN11 PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 2.562e-92
Identity = 169/196 (86.22%), Postives = 174/196 (88.78%), Query Frame = 2
Query:    2 SHPGFGCWLSGVDINTQQSFEALNQRAVALVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKMAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 589
            SHPGFGCWLSGVDINTQQSFEALNQRAVA+VVDPIQSVKGKVVIDAFR INPQT+MLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYR                WTDGLTL RFD HSKTNEQTVQEML+LA KYNKAVQEEDEL PEK+AI NVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV+F
Sbjct:  113 SHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRSINPQTIMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKTNEQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 308          
BLAST of FC927891 vs. ExPASy Swiss-Prot
Match: PSDE_MOUSE (26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus GN=Psmd14 PE=1 SV=2)

HSP 1 Score: 280.026 bits (715), Expect = 6.340e-75
Identity = 139/197 (70.56%), Postives = 156/197 (79.19%), Query Frame = 2
Query:    2 SHPGFGCWLSGVDINTQQSFEALNQRAVALVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKMAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIFQ 592
            SHPGFGCWLSGVDINTQQSFEAL++RAVA+VVDPIQSVKGKVVIDAFRLIN   M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYR                W +GLTL  +  H K NE  V+EML LA  YNKAV+EED++ PE++AI NVG+QD K+HLEEHV  LM+SNIVQ L  MLDTV+F+
Sbjct:  114 SHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTVVFK 310          
BLAST of FC927891 vs. ExPASy Swiss-Prot
Match: PSDE_HUMAN (26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens GN=PSMD14 PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 6.340e-75
Identity = 139/197 (70.56%), Postives = 156/197 (79.19%), Query Frame = 2
Query:    2 SHPGFGCWLSGVDINTQQSFEALNQRAVALVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKMAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIFQ 592
            SHPGFGCWLSGVDINTQQSFEAL++RAVA+VVDPIQSVKGKVVIDAFRLIN   M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYR                W +GLTL  +  H K NE  V+EML LA  YNKAV+EED++ PE++AI NVG+QD K+HLEEHV  LM+SNIVQ L  MLDTV+F+
Sbjct:  114 SHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTVVFK 310          
BLAST of FC927891 vs. ExPASy Swiss-Prot
Match: PSDE_DROME (26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila melanogaster GN=Rpn11 PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.040e-73
Identity = 132/197 (67.01%), Postives = 158/197 (80.20%), Query Frame = 2
Query:    2 SHPGFGCWLSGVDINTQQSFEALNQRAVALVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKMAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIFQ 592
            SHPGFGCWLSGVDINTQQSFEAL++RAVA+VVDPIQSVKGKVVIDAFRLINP  ++LGQEPRQTTSNLGHL KPS+QALIHGLNRHYYSI+INYR                W DGLTL  ++ H   NE TV EML+LA  YNK++++E+++ PE++AI NVG+QD K+HLEE V  +M +NIVQ LG MLDT++F+
Sbjct:  112 SHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTVAEMLDLAKNYNKSLEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDKVMQNNIVQCLGAMLDTIVFK 308          
BLAST of FC927891 vs. ExPASy Swiss-Prot
Match: RPN11_SCHPO (26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces pombe GN=rpn11 PE=1 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.161e-60
Identity = 115/196 (58.67%), Postives = 138/196 (70.41%), Query Frame = 2
Query:    2 SHPGFGCWLSGVDINTQQSFEALNQRAVALVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKMAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 589
            SHPGFGCWLS VDINTQQSFE L  RAVA+VVDPIQSVKGKVVIDAFRLINP T+M+GQEPRQTTSNLGH+NKPSIQALIHGL RHYYS+ INY+                W  GL L  F+  ++ N  ++ +M +L+ +Y + VQ E  L PE++ I  VG+QD KKHL+  V   + +NI   L  MLD+V F
Sbjct:  113 SHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDPIQSVKGKVVIDAFRLINPSTLMMGQEPRQTTSNLGHINKPSIQALIHGLGRHYYSLRINYKKTELEEIMLLNLHKQPWAHGLLLENFNSAAEKNHASIDKMKSLSEQYTERVQNEVTLSPEQLRIQYVGKQDPKKHLDAEVQKCIDNNISSMLACMLDSVAF 308          
BLAST of FC927891 vs. ExPASy Swiss-Prot
Match: PSDE_CAEEL (26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis elegans GN=rpn-11 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.161e-60
Identity = 114/197 (57.87%), Postives = 142/197 (72.08%), Query Frame = 2
Query:    2 SHPGFGCWLSGVDINTQQSFEALNQRAVALVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKMAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIFQ 592
            SHPGFGCWLSGVDINTQQSFEAL+ RAVA+VVDPIQSVKGKVVIDAFR INPQ+M L QEPRQTTSNLGHL KPSIQALIHGLNRHYYSI I YR                W D +++  +    + N++ ++ ML LA  Y KA+++E  +  +++AI NVG+ D K+H+ + VS +++ NIVQ+L  M+ T   Q
Sbjct:  116 SHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPIQSVKGKVVIDAFRTINPQSMALNQEPRQTTSNLGHLQKPSIQALIHGLNRHYYSIPIAYRTHDLEQKMLLNLNKLSWMDAVSVENYSKCGEQNKEHLKAMLKLAKNYKKALEDEKNMTDQELAIKNVGKMDPKRHIADEVSKMLNDNIVQSLAGMMATTSLQ 312          
BLAST of FC927891 vs. ExPASy Swiss-Prot
Match: PSDE_DICDI (26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium discoideum GN=psmD14 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 7.042e-58
Identity = 110/196 (56.12%), Postives = 137/196 (69.90%), Query Frame = 2
Query:    2 SHPGFGCWLSGVDINTQQSFEALNQRAVALVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKMAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 589
            SHPGFGCWLS VD+NTQQSFE L  RAVA+VVDP+QSV+GKVVIDAFR I         EPRQ TSNLGHL  PSIQALIHGLNR+YYSIAINYR                WT+GL + +FD H ++NE+ +  +L L  +Y K++Q+ED++ PEK  ++ VG+ D K+HL   V  LM++N+V+ L  MLDTV F
Sbjct:  114 SHPGFGCWLSSVDVNTQQSFEQLQSRAVAVVVDPLQSVRGKVVIDAFRTIKTSPT---AEPRQITSNLGHLQDPSIQALIHGLNRNYYSIAINYRKNELEQKMLLNLHKKKWTEGLIVDKFDTHEQSNEKQINNLLELTKQYQKSIQDEDKIEPEKKEVSAVGKLDPKRHLISDVHTLMANNVVRVLTVMLDTVTF 306          
BLAST of FC927891 vs. ExPASy Swiss-Prot
Match: RPN11_ASHGO (26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii GN=RPN11 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.985e-52
Identity = 100/194 (51.55%), Postives = 132/194 (68.04%), Query Frame = 2
Query:    2 SHPGFGCWLSGVDINTQQSFEALNQRAVALVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKMAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV 583
            SHPGFGCWLS VD++TQ+SFE LN RAVA+VVDPIQSVKGKVVIDAFRLI+P T++  QEPRQTTSN+G LNKP+IQ+LIHGLNRHYYS+ I+Y                 W  GL +H +    + N +  ++ + +A +Y K ++EE EL  +++    VG+QD KKHL E    ++  NIV  L   +++V
Sbjct:  115 SHPGFGCWLSSVDVDTQRSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLISPATVVRNQEPRQTTSNVGLLNKPNIQSLIHGLNRHYYSLNIDYHKTSAELNMLMNLHKEQWQSGLKMHDYKEKERINLEATKKSVRIAEQYTKRIEEEKELTEDELKTRYVGKQDPKKHLSETAERVLEENIVSVLTAGVNSV 308          
BLAST of FC927891 vs. ExPASy Swiss-Prot
Match: RPN11_YEAST (26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae GN=RPN11 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.858e-50
Identity = 100/194 (51.55%), Postives = 129/194 (66.49%), Query Frame = 2
Query:    2 SHPGFGCWLSGVDINTQQSFEALNQRAVALVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKMAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV 583
            SHPGFGCWLS VD+NTQ+SFE LN RAVA+VVDPIQSVKGKVVIDAFRLI+   ++   EPRQTTSN G LNK +IQALIHGLNRHYYS+ I+Y                 W  GL ++ ++   ++N    + M+ +A +Y+K ++EE EL  E++    VGRQD KKHL E     + +NIV  L   +++V
Sbjct:  110 SHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAATKSMVKIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVLTAGVNSV 303          
BLAST of FC927891 vs. ExPASy Swiss-Prot
Match: RPN11_CANGA (26S proteasome regulatory subunit RPN11 OS=Candida glabrata GN=RPN11 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.976e-49
Identity = 97/194 (50.00%), Postives = 126/194 (64.95%), Query Frame = 2
Query:    2 SHPGFGCWLSGVDINTQQSFEALNQRAVALVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKMAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV 583
            SHPGFGCWLS VD+NTQ+SFE LN RAVA+VVDPIQSVKGKVVIDAFRLI+   ++  QEPRQTTSN G +NK +IQALIHGLNRHYYS+ I+Y                 W  GL +  +      N +  + M+ +A +Y+K ++EE EL  E++    VG+QD KKHL +   N +  N V  L   ++++
Sbjct:  110 SHPGFGCWLSSVDVNTQKSFEQLNNRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNQEPRQTTSNSGLMNKANIQALIHGLNRHYYSLNIDYHKTPAETKMLLNLHKEQWQSGLKMQDYQEKETENLEATKRMVAVAQQYSKRIEEEKELSEEELKTRYVGKQDPKKHLAKTAENTLEENTVSVLTAGVNSI 303          
The following BLAST results are available for this feature:
BLAST of FC927891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PSDE_ARATH2.562e-9286.2226S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_MOUSE6.340e-7570.5626S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_HUMAN6.340e-7570.5626S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_DROME2.040e-7367.0126S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_SCHPO1.161e-6058.6726S proteasome regulatory subunit rpn11 OS=Schizos... [more]
PSDE_CAEEL1.161e-6057.8726S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_DICDI7.042e-5856.1226S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_ASHGO1.985e-5251.5526S proteasome regulatory subunit RPN11 OS=Ashbya ... [more]
RPN11_YEAST1.858e-5051.5526S proteasome regulatory subunit RPN11 OS=Sacchar... [more]
RPN11_CANGA5.976e-4950.0026S proteasome regulatory subunit RPN11 OS=Candida... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP4YH17FM1 TF Citrus clementina cDNA clone KN0AAP4YH17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927891 ID=FC927891; Name=FC927891; organism=Citrus clementina; type=EST; length=608bp
CTCACATCCTGGCTTTGGATGCTGGCTCTCTGGTGTTGACATAAACACAC
AGCAGAGTTTTGAAGCTTTGAATCAAAGGGCTGTTGCTTTGGTTGTGGAT
CCAATCCAGAGCGTGAAAGGGAAGGTAGTGATTGATGCCTTCCGCTTGAT
TAATCCCCAAACCATGATGCTTGGCCAAGAACCACGGCAGACAACTTCCA
ATCTTGGTCATCTTAATAAGCCATCCATCCAAGCATTGATCCATGGCTTG
AATAGACATTATTATTCTATTGCCATCAATTACAGGAAGAATGAACTTGA
AGAAAAGATGCTACTAAATCTGCACAAGAAGAAATGGACTGATGGATTAA
CACTTCATCGCTTTGATTGCCATTCCAAAACCAATGAACAGACTGTCCAG
GAGATGTTAAATTTGGCTGTCAAATATAACAAGGCAGTTCAAGAAGAAGA
CGAGCTGCCGCCAGAGAAGATGGCCATTGCTAATGTGGGAAGGCAAGATG
CAAAGAAGCACCTTGAGGAACATGTCTCCAACTTGATGTCCTCAAACATA
GTTCAAACTTTGGGAACCATGCTTGATACAGTCATATTCCAGATGTTGGT
TTGTTTTC
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