FC927895

Overview
NameFC927895
Unique NameFC927895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14817 contig Ccv1_Contig14817:27..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC927895 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 7.542e-95
Identity = 166/178 (93.26%), Postives = 172/178 (96.63%), Query Frame = 3
Query:   48 MVTFRFHQYQVVGIALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 581
            MVTFRFHQYQVVG  LP+E+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQIIKTATIPAKLCKRES+KQFHNSKIKFPLV RK+RPPSRKL+T YKA+RPNLFM
Sbjct:    1 MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178          
BLAST of FC927895 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 342.043 bits (876), Expect = 1.858e-93
Identity = 164/178 (92.13%), Postives = 169/178 (94.94%), Query Frame = 3
Query:   48 MVTFRFHQYQVVGIALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 581
            M  FRFHQYQVVG ALPTE D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA +PNLFM
Sbjct:    1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178          
BLAST of FC927895 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.573e-92
Identity = 161/175 (92.00%), Postives = 167/175 (95.43%), Query Frame = 3
Query:   57 FRFHQYQVVGIALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 581
            FRFHQYQVVG ALPTE+DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQMLAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKRE TKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA++PNLFM
Sbjct:    4 FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178          
BLAST of FC927895 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 5.593e-90
Identity = 157/178 (88.20%), Postives = 167/178 (93.82%), Query Frame = 3
Query:   48 MVTFRFHQYQVVGIALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 581
            M  FRFHQYQVVG  LPT +DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+  KLCKR++TKQFH S IKFPLV+RKVRPP+RKL+TT+KA+RPNLFM
Sbjct:    1 MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178          
BLAST of FC927895 vs. ExPASy Swiss-Prot
Match: RL18A_DICDI (60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.668e-49
Identity = 95/171 (55.56%), Postives = 121/171 (70.76%), Query Frame = 3
Query:   66 HQYQVVGIALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 578
            H++QVVG  +PTE D +PKIYRM+L+A   + AKS+FWYFL K+ K+KKS G++L + EIFE  P K+KN+G+++RY SR+G HN+YKEYRD T  GAV QMY EMASRH  R   I II    I A L +R +TKQFH+SKIKFPL  R       K ++T+ A RPN F
Sbjct:    4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHIIDIKEIAASLTRRANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRPNTF 169          
BLAST of FC927895 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 9.988e-47
Identity = 88/170 (51.76%), Postives = 121/170 (71.18%), Query Frame = 3
Query:   69 QYQVVGIALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 578
            +Y+VVG  LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of FC927895 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.988e-47
Identity = 88/170 (51.76%), Postives = 121/170 (71.18%), Query Frame = 3
Query:   69 QYQVVGIALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 578
            +Y+VVG  LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of FC927895 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.704e-46
Identity = 88/170 (51.76%), Postives = 121/170 (71.18%), Query Frame = 3
Query:   69 QYQVVGIALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 578
            +Y+VVG  LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of FC927895 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.704e-46
Identity = 88/170 (51.76%), Postives = 121/170 (71.18%), Query Frame = 3
Query:   69 QYQVVGIALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 578
            +Y+VVG  LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          
BLAST of FC927895 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.225e-46
Identity = 86/170 (50.59%), Postives = 122/170 (71.76%), Query Frame = 3
Query:   69 QYQVVGIALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 578
            +Y+V+G  LP+ES+  P +Y+M++++ +++ AKS+FWYFLR+LKK KK+ G++++I EI EK+P KIKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R+  IQIIK   I A  C+R   KQFHNS I+FPL     R    K   T+   RP+ +
Sbjct:    9 EYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKASACRRPQVKQFHNSTIRFPL---PKRVHHHKRLNTFAYKRPSTY 175          
The following BLAST results are available for this feature:
BLAST of FC927895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL18A_CASSA7.542e-9593.2660S ribosomal protein L18a OS=Castanea sativa GN=R... [more]
R18A2_ARATH1.858e-9392.1360S ribosomal protein L18a-2 OS=Arabidopsis thalia... [more]
R18A3_ARATH1.573e-9292.0060S ribosomal protein L18a-3 OS=Arabidopsis thalia... [more]
RL18A_ORYSJ5.593e-9088.2060S ribosomal protein L18a OS=Oryza sativa subsp. ... [more]
RL18A_DICDI3.668e-4955.5660S ribosomal protein L18a OS=Dictyostelium discoi... [more]
RL18A_HUMAN9.988e-4751.7660S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]
RL18A_BOVIN9.988e-4751.7660S ribosomal protein L18a OS=Bos taurus GN=RPL18A... [more]
RL18A_RAT1.704e-4651.7660S ribosomal protein L18a OS=Rattus norvegicus GN... [more]
RL18A_MOUSE1.704e-4651.7660S ribosomal protein L18a OS=Mus musculus GN=Rpl1... [more]
RL18A_SPOFR2.225e-4650.5960S ribosomal protein L18a OS=Spodoptera frugiperd... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP4YH21FM1 TF Citrus clementina cDNA clone KN0AAP4YH21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927895 ID=FC927895; Name=FC927895; organism=Citrus clementina; type=EST; length=723bp
GAGAGAGTTACCCTTCGGAGATCGTCACATCTTGTATTTCCTCGAAAATG
GTCACTTTCAGGTTTCACCAGTATCAGGTTGTTGGGATAGCTCTTCCAAC
TGAGTCCGATGAGCATCCTAAGATTTACAGGATGAAGTTGTGGGCCACGA
ATGAGGTTCGAGCCAAGTCCAAGTTCTGGTACTTTCTTAGAAAGCTCAAG
AAGGTCAAGAAGAGTAATGGTCAAATGCTTGCCATTAACGAGATTTTTGA
GAAGAACCCAACCAAGATCAAGAACTATGGCATCTGGTTGCGTTATCAGA
GTCGAACTGGTTATCACAATATGTACAAGGAGTACCGTGATACCACTCTG
AACGGGGCTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCATAGGGT
CAGGTCTCCTTGCATTCAAATTATCAAGACTGCTACCATCCCTGCGAAGC
TATGCAAGAGAGAAAGCACCAAGCAGTTCCACAATTCAAAAATCAAGTTT
CCGTTGGTGTTCAGGAAGGTGAGACCACCAAGCAGGAAGCTGAGGACCAC
ATACAAGGCAACAAGGCCTAACTTGTTTATGTAACTCTCTTATCATTTGA
TAATTGAGACTTCAAGAGGGTTTAACAGTGGATATCTATCTATTTTTCTA
AGGATATGTTTGGTAGTTACCTTTATGTCAGTTGTTTTTGTTCAACGGAT
ACCTGTTTTTATGTTGAGAATAT
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