FC927896

Overview
NameFC927896
Unique NameFC927896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length614
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig568 contig Ccv1_Contig568:16..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC927896 vs. ExPASy Swiss-Prot
Match: YAI5_SCHPO (Uncharacterized protein C24B11.05 OS=Schizosaccharomyces pombe GN=SPAC24B11.05 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.681e-12
Identity = 46/129 (35.66%), Postives = 66/129 (51.16%), Query Frame = 1
Query:  106 LLFDLDDTIYPLTSGLSKEVTKNIQEYMLQKLCIEEAKVPELCVSLYKFYGTTLAGLRAIGYQFDCDDFHSYVHGRLPY-MMLKPDPVLRNLLLSL--PIRKVIFTNADKTHAARVLSRLGLEDCFERI 483
            + FDLD+ +YP +  +   +   I  +   KL I   +   L    Y+ YG  + GL  + ++ D  D+   V   LP   ++K D VLR +LL L    +  IFTNA   HA RVL  LG+EDCF+ I
Sbjct:    8 IFFDLDNCLYPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGL-VLHHEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAYIVHANRVLKYLGIEDCFDGI 135          
The following BLAST results are available for this feature:
BLAST of FC927896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YAI5_SCHPO7.681e-1235.66Uncharacterized protein C24B11.05 OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP4YH22FM1 TF Citrus clementina cDNA clone KN0AAP4YH22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927896 ID=FC927896; Name=FC927896; organism=Citrus clementina; type=EST; length=614bp
CTGTTAAGAACCCTTTGATCATTTTCCAATCAGTTTGAGTTCCTTTAGCT
AAAAATGGAATACAAGAATGAGAACAAGCAGGTTTCACTCCAAAAATATG
ATTGTCTCTTATTTGATCTAGATGACACCATTTATCCTCTGACTTCTGGA
TTGTCAAAAGAAGTGACCAAGAATATTCAAGAATATATGCTCCAAAAGCT
TTGCATCGAGGAGGCTAAAGTCCCTGAATTGTGTGTTTCTTTGTACAAAT
TCTATGGGACAACATTGGCAGGTCTTCGGGCTATCGGCTATCAGTTTGAC
TGTGATGACTTCCACAGTTATGTTCATGGGAGATTGCCCTACATGATGCT
AAAACCTGACCCTGTTTTAAGGAATCTTTTGCTTAGTCTGCCCATTCGGA
AAGTTATTTTTACCAATGCAGATAAAACTCATGCTGCTAGAGTGCTTAGC
AGGCTTGGTCTGGAGGATTGCTTTGAAAGAATTATATCCTTTGAAACTTT
GAATTCCACCGACAAAGGCACTGTTCTGGTGGATCAGGATGCCTCCGAAT
CCGAAAGACCTACTGAATTATTTGACATTGATGATTATTGTTCTCGTCCC
AATGCTGATCTCGA
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