FC928200

Overview
NameFC928200
Unique NameFC928200
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7639 contig Ccv1_Contig7639:92..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928200 vs. ExPASy Swiss-Prot
Match: CHKB_MOUSE (Choline/ethanolamine kinase OS=Mus musculus GN=Chkb PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 55/183 (30.05%), Postives = 101/183 (55.19%), Query Frame = 2
Query:  188 DALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRK-ALLWDRLRKWVSVAKSF--CSAKDAKEFCLYTLKDEISMLEKELPNDPQEIGFCHNDLQYGNIM 718
            + L V P+ G ++N +++ + P       G  R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E+++ +R L   ++RDP +S  +A +M  FH ++MP  ++   L+  + +++   +     S        +Y+LKDE++ L K L + P  + FCHND+Q GNI+
Sbjct:   67 EELSVCPVSGGLSNLLFRCSLPNHVPSVGGEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYLPSRPLKTQELRDPVLSGAIATRMARFHGMEMPFTKEPRWLFGTMERYLKQIQDLPSTSLPQMNLVEMYSLKDEMNSLRKLLDDTPSPVVFCHNDIQEGNIL 249          
BLAST of FC928200 vs. ExPASy Swiss-Prot
Match: CHKB_HUMAN (Choline/ethanolamine kinase OS=Homo sapiens GN=CHKB PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 54/183 (29.51%), Postives = 102/183 (55.74%), Query Frame = 2
Query:  188 DALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA-LLWDRLRKWVSVAKSF--CSAKDAKEFCLYTLKDEISMLEKELPNDPQEIGFCHNDLQYGNIM 718
            + L+V P+ G ++N +++ + P     +    R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E++I +R L   ++R+P +S  +A KM +FH ++MP  ++   L+  + +++   +        +     +Y+LKDE+  L K L + P  + FCHND+Q GNI+
Sbjct:   67 EELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEGNIL 249          
BLAST of FC928200 vs. ExPASy Swiss-Prot
Match: CHKB_RAT (Choline/ethanolamine kinase OS=Rattus norvegicus GN=Chkb PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 55/183 (30.05%), Postives = 99/183 (54.10%), Query Frame = 2
Query:  188 DALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRK-ALLWDRLRKWVSVAKSF--CSAKDAKEFCLYTLKDEISMLEKELPNDPQEIGFCHNDLQYGNIM 718
            + L V P+ G ++N +++ + P       G  R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E+++ +R L   ++RDP +S  +A KM  FH ++MP  ++   L+  + +++   +     S        +Y+LKDE++ L   L   P  + FCHND+Q GNI+
Sbjct:   67 EELSVCPVSGGLSNLLFRCSLPNHVPSMGGEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYLPSRPLKTQELRDPVLSGAIATKMARFHGMEMPFTKEPRWLFGTMERYLKQIQDLPSTSLPQMNLVEMYSLKDEMNHLRTLLDATPSPVVFCHNDIQEGNIL 249          
BLAST of FC928200 vs. ExPASy Swiss-Prot
Match: KICH_SCHPO (Putative choline kinase OS=Schizosaccharomyces pombe GN=SPAC13G7.12c PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 61/192 (31.77%), Postives = 98/192 (51.04%), Query Frame = 2
Query:  194 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKAL----LWDRLRKWVSVAKSFC-----SAKDAKEFCLYTLKDEISMLEK---ELPNDPQE-----IGFCHNDLQYGNIM 718
            L +  + GA+TN VY +A P   +  A  +L+RIYG  VE+F NR  E+   + ++    GP L+G F +GR E+++ + TL+   IRDPK+S  V  ++ E H+  +  P + L     W     W+  AK+       S     EF + TL+++ +       E   D ++     + F HND QYGN++
Sbjct:   63 LHIKRISGALTNAVYYVAPPEGYH--APKLLLRIYGPHVELFINRQVELENLKRLARHNIGPYLIGEFSNGRFEQYMESTTLTCKTIRDPKLSIYVGRRLCELHNFILLHPHEVLEMPAAWKNCLVWLPKAKAKILGRKHSLAITSEF-MKTLEEDFNAYYNWFVEWSRDKKDWFGLKMVFSHNDTQYGNLL 251          
BLAST of FC928200 vs. ExPASy Swiss-Prot
Match: CHKA_MOUSE (Choline kinase alpha OS=Mus musculus GN=Chka PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.306e-14
Identity = 59/205 (28.78%), Postives = 95/205 (46.34%), Query Frame = 2
Query:  188 DALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYG----------EGVEVFFNRDD---------EIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMP-GPRKALLWDRLRKWVSVAKSFCSAKDAK-----EFCLYTLKDEISMLEKELPNDPQEIGFCHNDLQYGNIM 718
            D   +  ++G ++N ++Q + P   A      R VL+R+YG          EG E   N ++         E   F  ++ +  GP+L G F  GR+E+FI +R L   ++R P IS  +A KM  FH +KMP       L+  + K+++       +++A+     +   Y L  E+  L   L      + FCHND Q GNI+
Sbjct:  105 DQFHISVIRGGLSNMLFQCSLPDSIASVGDEPRKVLLRLYGAILKMRSCNKEGSEQAQNENEFQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELRLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLNQVLRLKFSREARVQQLHKILSYNLPLELENLRSLLQYTRSPVVFCHNDCQEGNIL 309          
BLAST of FC928200 vs. ExPASy Swiss-Prot
Match: KICH_YEAST (Choline kinase OS=Saccharomyces cerevisiae GN=CKI1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.706e-14
Identity = 61/214 (28.50%), Postives = 105/214 (49.07%), Query Frame = 2
Query:  137 KVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFI-HARTLSAADIRDPKISELVAAKMREFHD----LKMPGPRKALLWDRLRKWV-SVAKSFCSAKDAKE-----FCLYTLK--DEISMLEKELPNDPQEIG-------FCHNDLQYGNIM 718
            K +Q VA D          + ++ + GAMTN ++++ +P        ++L+RIYG  ++   +R+ E++    +S +  GP L G F +GR E+F+ +++TL+  DIR+ K S+ +A +M+E H     L       +  W ++ +W+ ++ K      D K       C    K  D +    K L +  Q I        FCHND QYGN++
Sbjct:  139 KKIQPVAQD----------MNLVKISGAMTNAIFKVEYPK-----LPSLLLRIYGPNIDNIIDREYELQILARLSLKNIGPSLYGCFVNGRFEQFLENSKTLTKDDIRNWKNSQRIARRMKELHVGVPLLSSERKNGSACWQKINQWLRTIEKVDQWVGDPKNIENSLLCENWSKFMDIVDRYHKWLISQEQGIEQVNKNLIFCHNDAQYGNLL 337          
BLAST of FC928200 vs. ExPASy Swiss-Prot
Match: CHKA_RAT (Choline kinase alpha OS=Rattus norvegicus GN=Chka PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 59/205 (28.78%), Postives = 95/205 (46.34%), Query Frame = 2
Query:  188 DALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYG----------EGVEVFFNRDD---------EIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMP-GPRKALLWDRLRKWVSVAKSFCSAKDAK-----EFCLYTLKDEISMLEKELPNDPQEIGFCHNDLQYGNIM 718
            D   +  ++G ++N ++Q + P   A      R VL+R+YG          EG E   N ++         E   F  ++ +  GP+L G F  GR+E+FI +R L   ++  P IS  +A KM  FH +KMP       L+  + K+++       +++A+     +F  Y L  E+  L   L      + FCHND Q GNI+
Sbjct:  105 DQFHISVIRGGLSNMLFQCSLPDSIASVGDEPRKVLLRLYGAILKMRSCNKEGSEQAQNENEFQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELCLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLNQVLRLKFSREARVQQLHKFLSYNLPLELENLRSLLQYTRSPVVFCHNDCQEGNIL 309          
BLAST of FC928200 vs. ExPASy Swiss-Prot
Match: EKIA_DICDI (Probable ethanolamine kinase A OS=Dictyostelium discoideum GN=etnkA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.964e-14
Identity = 49/184 (26.63%), Postives = 87/184 (47.28%), Query Frame = 2
Query:  194 LQVIPLKGAMTNEVYQIAWPAKNNGLARN-----VLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFC----LYTLKDEISMLEKELPNDPQEIGFCHNDLQYGNIM 718
            L +  L G +TN +Y +    ++  + +      V++R+YG   E   +R +E+         G G +  G F +G +  FI    L+  DI  P +   +A ++ ++H ++MP  +   LW  ++KW ++A       +  E+     +  + +E  MLE+ L      I FCHNDL  GNI+
Sbjct:   44 LTIQKLNGGITNVLYLV----EDKNIEQKYRYLPVVIRLYGYKSEEIIDRKNELIIQTEADQNGLGAKFYGLFDNGCIYGFIKGEPLAYEDISKPTMQTCIAKEIAQWHSIEMPTRKNPSLWPTIKKWAALAPDVYPVPEKNEYYQSINVKKMIEEGKMLEQRLAQLNSPIVFCHNDLLSGNII 223          
BLAST of FC928200 vs. ExPASy Swiss-Prot
Match: CHKA_HUMAN (Choline kinase alpha OS=Homo sapiens GN=CHKA PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.964e-14
Identity = 57/205 (27.80%), Postives = 93/205 (45.37%), Query Frame = 2
Query:  188 DALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYG----------EGVEVFFNRDD---------EIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMP-GPRKALLWDRLRKWVSVAKSFCSAKDAK-----EFCLYTLKDEISMLEKELPNDPQEIGFCHNDLQYGNIM 718
            D   +  ++G ++N ++Q + P     L    R VL+R+YG          EG E     ++         E   F  ++ +  GP+L G F  GR+E+FI +R L   ++  P IS  +A KM  FH +KMP       L+  + K++         ++++     +   Y L  E+  L   L + P  + FCHND Q GNI+
Sbjct:  109 DEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEESRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNIL 313          
BLAST of FC928200 vs. ExPASy Swiss-Prot
Match: EKI2_HUMAN (Ethanolamine kinase 2 OS=Homo sapiens GN=ETNK2 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.467e-14
Identity = 43/148 (29.05%), Postives = 80/148 (54.05%), Query Frame = 2
Query:  281 VLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGP-RKALLWDRLRKWVSVAKSFCS-AKDAKEFCLYTLKDEISMLEKELPNDPQEIGFCHNDLQYGNIM 718
            VLVR+YGE  E+  +R++E+R F+ + +    P+L   F +G   E++    L    IR+P++  L+A +M + H +   G   K +LW ++  + ++ K+  + +  A    +  L+ E++ L++ L      + FCHNDL   NI+
Sbjct:  109 VLVRVYGERTELLVDRENEVRNFQLLRAHSCAPKLYCTFQNGLCYEYMQGVALEPEHIREPRLFRLIALEMAKIHTIHANGSLPKPILWHKMHNYFTLVKNEINPSLSADVPKVEVLERELAWLKEHLSQLESPVVFCHNDLLCKNII 256          
The following BLAST results are available for this feature:
BLAST of FC928200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CHKB_MOUSE1.349e-1930.05Choline/ethanolamine kinase OS=Mus musculus GN=Chk... [more]
CHKB_HUMAN3.004e-1929.51Choline/ethanolamine kinase OS=Homo sapiens GN=CHK... [more]
CHKB_RAT6.693e-1930.05Choline/ethanolamine kinase OS=Rattus norvegicus G... [more]
KICH_SCHPO9.665e-1831.77Putative choline kinase OS=Schizosaccharomyces pom... [more]
CHKA_MOUSE1.306e-1428.78Choline kinase alpha OS=Mus musculus GN=Chka PE=1 ... [more]
KICH_YEAST1.706e-1428.50Choline kinase OS=Saccharomyces cerevisiae GN=CKI1... [more]
CHKA_RAT2.228e-1428.78Choline kinase alpha OS=Rattus norvegicus GN=Chka ... [more]
EKIA_DICDI4.964e-1426.63Probable ethanolamine kinase A OS=Dictyostelium di... [more]
CHKA_HUMAN4.964e-1427.80Choline kinase alpha OS=Homo sapiens GN=CHKA PE=1 ... [more]
EKI2_HUMAN8.467e-1429.05Ethanolamine kinase 2 OS=Homo sapiens GN=ETNK2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO06FM1 TF Citrus clementina cDNA clone KN0AAP9YO06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928200 ID=FC928200; Name=FC928200; organism=Citrus clementina; type=EST; length=719bp
ACAACTCAGTTTTTCTCTTCCTCTTAGGTAAAGTTTTCAATTTTTGTTGC
AATCACCACTTTGTGCTGAGCTGACTACAAGAATGGCTATAAAGACAACT
GAATTGTTACCAAGTTCTTCTCCAGAAGAATTAAAGAAAGTTCTTCAGTC
AGTAGCTTCCGACTGGGGAGATGTTATCGATGATTCGGATGCATTGCAGG
TGATTCCATTAAAAGGTGCAATGACTAATGAGGTTTACCAAATAGCGTGG
CCTGCAAAAAATAATGGTCTTGCTAGAAACGTTTTGGTCCGGATTTATGG
AGAAGGCGTCGAGGTTTTCTTCAACAGGGATGATGAAATTAGAACCTTTG
AGTGCATGTCCAGCCAAGGCCAGGGGCCTAGGCTTCTCGGGCGGTTCGGT
GATGGAAGAGTTGAGGAGTTCATTCATGCCAGGACACTGTCGGCTGCTGA
CATCCGTGACCCCAAAATCTCTGAGTTGGTAGCAGCTAAGATGAGAGAAT
TTCATGATCTCAAAATGCCTGGTCCAAGGAAAGCACTACTATGGGACAGA
CTGAGGAAATGGGTTAGTGTGGCCAAAAGTTTCTGTTCTGCTAAAGATGC
AAAGGAATTCTGCTTGTATACTCTGAAGGATGAAATCAGTATGCTGGAGA
AAGAGTTGCCAAATGACCCTCAAGAGATTGGCTTTTGTCACAATGATCTT
CAGTATGGAAACATTATGA
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