FC928202

Overview
NameFC928202
Unique NameFC928202
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC928202_ssr1 microsatellite FC928202_ssr1:1..10. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1544 contig Ccv1_Contig1544:2..404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 8.562e-55
Identity = 104/124 (83.87%), Postives = 115/124 (92.74%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            MVSLKLQKRL+ASV+KCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR+MK AK KGRHSGYGKRKGTREARLPT +LWM RMRVL+RLL+KYRE+ KID  MYHD+Y
Sbjct:    1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 3.253e-54
Identity = 103/124 (83.06%), Postives = 115/124 (92.74%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            MVSLKLQKRL++SVLKCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR++  AKRKGRHSGYGKRKGTREARLPT +LWM RMRVL+RLL+KYRE+ KID  MYHD+Y
Sbjct:    1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 4.249e-54
Identity = 103/124 (83.06%), Postives = 112/124 (90.32%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            MVSLK+QKRL+ASV+KCG+ KVWLDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR + +AKRKGRHSGYGKRKGTREARLPT ILWM RMRVL+R L KYRES KID  MYHD+Y
Sbjct:    1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 3.261e-46
Identity = 86/124 (69.35%), Postives = 104/124 (83.87%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M SLKLQKRL+ASVL+CG+ KVWLDPNE+NEI+  NSRQNIRKL+KDG II+KP  +HSR R R+  +A+RKGRH G+GKRKGT  AR+PT +LWM R RVL+RLL+KYR+S KID  +YHDLY
Sbjct:    1 MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19B_SCHPO (60S ribosomal protein L19-B OS=Schizosaccharomyces pombe GN=rpl19b PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 4.709e-45
Identity = 86/124 (69.35%), Postives = 103/124 (83.06%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M +L+ QKRL+ASVLKCG+ KVW+DPNE++EIS ANSRQNIRKLVKDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+ ++WM R RVL+RLLRKYRES KID  +YH LY
Sbjct:    1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19A_SCHPO (60S ribosomal protein L19-A OS=Schizosaccharomyces pombe GN=rpl19a PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 8.032e-45
Identity = 84/124 (67.74%), Postives = 103/124 (83.06%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M +L+ QKRL+ASVLKCG+ KVW+DPNE++EIS ANSRQN+RKL+KDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+ ++WM R RVL+RLLRKYRES KID  +YH LY
Sbjct:    1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.584e-43
Identity = 83/124 (66.94%), Postives = 99/124 (79.84%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P  + WM RMR+L+RLLR+YRES KID  MYH LY
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_PONAB (60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.584e-43
Identity = 83/124 (66.94%), Postives = 99/124 (79.84%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P  + WM RMR+L+RLLR+YRES KID  MYH LY
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_MOUSE (60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.584e-43
Identity = 83/124 (66.94%), Postives = 99/124 (79.84%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P  + WM RMR+L+RLLR+YRES KID  MYH LY
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_MACFA (60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 2.584e-43
Identity = 83/124 (66.94%), Postives = 99/124 (79.84%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P  + WM RMR+L+RLLR+YRES KID  MYH LY
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLY 124          
The following BLAST results are available for this feature:
BLAST of FC928202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL191_ARATH8.562e-5583.8760S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL193_ARATH3.253e-5483.0660S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL192_ARATH4.249e-5483.0660S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL19_DROME3.261e-4669.3560S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19B_SCHPO4.709e-4569.3560S ribosomal protein L19-B OS=Schizosaccharomyces... [more]
RL19A_SCHPO8.032e-4567.7460S ribosomal protein L19-A OS=Schizosaccharomyces... [more]
RL19_RAT2.584e-4366.9460S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]
RL19_PONAB2.584e-4366.9460S ribosomal protein L19 OS=Pongo abelii GN=RPL19... [more]
RL19_MOUSE2.584e-4366.9460S ribosomal protein L19 OS=Mus musculus GN=Rpl19... [more]
RL19_MACFA2.584e-4366.9460S ribosomal protein L19 OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ06FM1 TF Citrus clementina cDNA clone KN0AAP12YJ06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928202 ID=FC928202; Name=FC928202; organism=Citrus clementina; type=EST; length=403bp
AGAGAGAGAGGGTTTTAGAAGAGAAGAGAAAATGGTGTCGTTGAAGTTAC
AGAAGCGGCTCTCCGCTAGCGTCCTCAAGTGCGGACGTGTCAAGGTCTGG
CTTGACCCTAATGAGGTCAACGAAATCTCCATGGCCAACTCCAGGCAGAA
CATTAGGAAATTGGTGAAGGATGGTTTCATCATCAGGAAGCCAACAAAGA
TCCACTCCCGTTCTCGTGCTCGCAGAATGAAGGACGCCAAGAGGAAGGGC
CGTCACTCTGGATATGGTAAGAGAAAGGGTACTAGGGAGGCGAGGCTTCC
CACCTAAATCCTCTGGATGATAAGGATGCGTGTGCTCAAGCGGTTGCTCC
GCAAATACCGTGAGTCGAACAAAATTGACTAGCCCATGTACCATGACCTG
TAC
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