FC928203

Overview
NameFC928203
Unique NameFC928203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC928203_ssr83 microsatellite FC928203_ssr83:83..112. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14944 contig Ccv1_Contig14944:1..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_ARATH (Oligoribonuclease OS=Arabidopsis thaliana GN=At2g26970 PE=2 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 3.310e-61
Identity = 109/143 (76.22%), Postives = 129/143 (90.21%), Query Frame = 2
Query:  206 EYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            +YK PLVWIDLEMTGL +EVDRILEIACIIT+G LT+SVEGPDLV+ QTK+CLD M +WCQ HH ASGLT+KVL SA+TEREAE++V+EFVKK+VG+  PLLAGNSVYVDF+FLKKYMP+LA+LF H+LVDVSS+KALC  W+
Sbjct:   41 DYKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWCQTHHGASGLTKKVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKKYMPELAALFPHILVDVSSVKALCARWF 183          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BOVIN (Oligoribonuclease, mitochondrial OS=Bos taurus GN=REXO2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.980e-33
Identity = 67/138 (48.55%), Postives = 91/138 (65.94%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            +VW+DLEMTGL IE D+I+E+AC+ITD  L    EGP+L+I Q  E LDSM +WC+ HH  SGLT+ V  S +T ++AE + + FV++        LAGNSV+ D  FL KYMP       + ++DVS++K LC  WY
Sbjct:   43 MVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWY 180          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_HUMAN (Oligoribonuclease, mitochondrial OS=Homo sapiens GN=REXO2 PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 8.494e-33
Identity = 67/138 (48.55%), Postives = 91/138 (65.94%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            +VW+DLEMTGL IE D+I+E+AC+ITD  L    EGP+L+I Q  E LDSM +WC+ HH  SGLT+ V  S +T ++AE + + FV++        LAGNSV+ D  FL KYMP       + ++DVS++K LC  WY
Sbjct:   43 MVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWY 180          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_RAT (Oligoribonuclease, mitochondrial OS=Rattus norvegicus GN=Rexo2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.472e-32
Identity = 66/138 (47.83%), Postives = 91/138 (65.94%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            +VW+DLEMTGL IE D+I+E+AC+ITD  L    EGP+L+I Q  E LDSM +WC+ HH  SGLT+ V  S +T ++AE + + FV++        LAGNSV+ D  FL K+MP       + ++DVS++K LC  WY
Sbjct:   43 MVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQFMKHLHYRIIDVSTVKELCRRWY 180          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_MOUSE (Oligoribonuclease, mitochondrial OS=Mus musculus GN=Rexo2 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.472e-32
Identity = 66/138 (47.83%), Postives = 91/138 (65.94%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            +VW+DLEMTGL IE D+I+E+AC+ITD  L    EGP+L+I Q  E LDSM +WC+ HH  SGLT+ V  S +T ++AE + + FV++        LAGNSV+ D  FL K+MP       + ++DVS++K LC  WY
Sbjct:   43 MVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQFMKHLHYRIIDVSTVKELCRRWY 180          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_PASMU (Oligoribonuclease OS=Pasteurella multocida GN=orn PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 71/140 (50.71%), Postives = 89/140 (63.57%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            K  L+WIDLEMTGL  E +RI+EIA I+TD  L    EGP L IHQ+ ECL  M +WC   H  +GL E+V +S LTER AE Q ++F+KK V      + GNSV  D  FL KYMP+LA  F +  +DVS++K L   W
Sbjct:    5 KQNLIWIDLEMTGLDPESERIIEIATIVTDKHLNILAEGPVLAIHQSDECLAKMNDWCMKTHTENGLVERVKNSRLTERAAELQTLDFLKKWVPKGVSPICGNSVSQDKRFLFKYMPELADYFHYRHLDVSTLKELASRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_HAEIG (Oligoribonuclease OS=Haemophilus influenzae (strain PittGG) GN=orn PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 70/140 (50.00%), Postives = 89/140 (63.57%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            K  L+WIDLEMTGL  E +RI+EIA I+TD  L    EGP L +HQ+ E L+ M +WCQ  H  +GL E+V  S LTER AE Q ++F+KK V      + GNS+  D  FL KYMPDLA  F +  +DVS++K L   W
Sbjct:    5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_HAEIE (Oligoribonuclease OS=Haemophilus influenzae (strain PittEE) GN=orn PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 70/140 (50.00%), Postives = 89/140 (63.57%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            K  L+WIDLEMTGL  E +RI+EIA I+TD  L    EGP L +HQ+ E L+ M +WCQ  H  +GL E+V  S LTER AE Q ++F+KK V      + GNS+  D  FL KYMPDLA  F +  +DVS++K L   W
Sbjct:    5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_HAEI8 (Oligoribonuclease OS=Haemophilus influenzae (strain 86-028NP) GN=orn PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 70/140 (50.00%), Postives = 89/140 (63.57%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            K  L+WIDLEMTGL  E +RI+EIA I+TD  L    EGP L +HQ+ E L+ M +WCQ  H  +GL E+V  S LTER AE Q ++F+KK V      + GNS+  D  FL KYMPDLA  F +  +DVS++K L   W
Sbjct:    5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_HAEIN (Oligoribonuclease OS=Haemophilus influenzae GN=orn PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.569e-31
Identity = 69/140 (49.29%), Postives = 89/140 (63.57%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            K  L+WIDLEMTGL  E +RI+EIA I+TD  L    EGP L +HQ+ E L+ M +WCQ  H  +GL E++  S LTER AE Q ++F+KK V      + GNS+  D  FL KYMPDLA  F +  +DVS++K L   W
Sbjct:    5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERIKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARW 144          
The following BLAST results are available for this feature:
BLAST of FC928203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_ARATH3.310e-6176.22Oligoribonuclease OS=Arabidopsis thaliana GN=At2g2... [more]
ORN_BOVIN4.980e-3348.55Oligoribonuclease, mitochondrial OS=Bos taurus GN=... [more]
ORN_HUMAN8.494e-3348.55Oligoribonuclease, mitochondrial OS=Homo sapiens G... [more]
ORN_RAT2.472e-3247.83Oligoribonuclease, mitochondrial OS=Rattus norvegi... [more]
ORN_MOUSE2.472e-3247.83Oligoribonuclease, mitochondrial OS=Mus musculus G... [more]
ORN_PASMU2.092e-3150.71Oligoribonuclease OS=Pasteurella multocida GN=orn ... [more]
ORN_HAEIG2.733e-3150.00Oligoribonuclease OS=Haemophilus influenzae (strai... [more]
ORN_HAEIE2.733e-3150.00Oligoribonuclease OS=Haemophilus influenzae (strai... [more]
ORN_HAEI82.733e-3150.00Oligoribonuclease OS=Haemophilus influenzae (strai... [more]
ORN_HAEIN3.569e-3149.29Oligoribonuclease OS=Haemophilus influenzae GN=orn... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 TF Citrus clementina cDNA clone KN0AAP9YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928203 ID=FC928203; Name=FC928203; organism=Citrus clementina; type=EST; length=636bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCC
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