FC928206

Overview
NameFC928206
Unique NameFC928206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length486
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9901 contig Ccv1_Contig9901:119..604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928206 vs. ExPASy Swiss-Prot
Match: CYTI_VIGUN (Cysteine proteinase inhibitor OS=Vigna unguiculata PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.263e-22
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 3
Query:    6 REVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQS 269
            R+V    N+ EI +LARFAV+EHNKKQN+ L+F            GTLY ITLEA +GGQKK++EAKVWEKPW+ FKEL+EF  V  +
Sbjct:    8 RDVAGNQNSLEIDSLARFAVEEHNKKQNALLEFGRVVSAQQQVVSGTLYTITLEAKDGGQKKVYEAKVWEKPWLNFKELQEFKHVGDA 95          
BLAST of FC928206 vs. ExPASy Swiss-Prot
Match: CYT6_ARATH (Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 2.380e-21
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = 3
Query:    3 VREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSSTA 284
            V +V A  N+ E+ +LARFAVDEHNKK+N+ L+F            GTL+ +TLE +E GQKKL+EAKVW KPW+ FKEL+EF P + + + T+
Sbjct:   40 VGDVPANQNSGEVESLARFAVDEHNKKENALLEFARVVKAKEQVVAGTLHHLTLEILEAGQKKLYEAKVWVKPWLNFKELQEFKPASDAPAITS 133          
BLAST of FC928206 vs. ExPASy Swiss-Prot
Match: CYT1_ORYSJ (Cysteine proteinase inhibitor 1 OS=Oryza sativa subsp. japonica GN=Os01g0803200 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.228e-19
Identity = 47/81 (58.02%), Postives = 54/81 (66.67%), Query Frame = 3
Query:   27 NNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQS 269
            N+  +V+LARFAV EHNKK NS L+F            GTLY  T+E  EG  KKL+EAKVWEKPWM FKEL+EF PV  S
Sbjct:   57 NDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPWMDFKELQEFKPVDAS 137          
BLAST of FC928206 vs. ExPASy Swiss-Prot
Match: CYTA_HELAN (Cysteine proteinase inhibitor A OS=Helianthus annuus PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.201e-18
Identity = 45/75 (60.00%), Postives = 50/75 (66.67%), Query Frame = 3
Query:   36 EIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPV 260
            EI  LARFAVDEHNKKQN+ L+F            G +Y ITLEA  GG KK +EAKVW KPW  FKEL+EF PV
Sbjct:    3 EIDELARFAVDEHNKKQNALLEFGKVVNTKEQVVAGKMYYITLEATNGGVKKTYEAKVWVKPWENFKELQEFKPV 77          
BLAST of FC928206 vs. ExPASy Swiss-Prot
Match: CYT12_ORYSJ (Cysteine proteinase inhibitor 12 OS=Oryza sativa subsp. japonica GN=Os01g0270100 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.201e-18
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 3
Query:    9 EVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSST 281
            +  + AN+ E   LARFAVDEHNK++N+ L+F            GTL+ +TLEA+E G+KK++EAKVW KPW+ FKEL+EF     + + T
Sbjct:   53 DAPSAANSVETDALARFAVDEHNKRENALLEFVRVVEAKEQVVAGTLHHLTLEALEAGRKKVYEAKVWVKPWLDFKELQEFRNTGDATTFT 143          
BLAST of FC928206 vs. ExPASy Swiss-Prot
Match: CYT3_ARATH (Cysteine proteinase inhibitor 3 OS=Arabidopsis thaliana GN=CYS3 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 7.166e-18
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 3
Query:    3 VREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEF 251
            V ++    N+ EI +LARFA+ EHNK+QN  L+F            GT+Y +TLEA EG Q K FEAKVW KPWM FK+L+EF
Sbjct:   38 VHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLTLEAKEGDQTKNFEAKVWVKPWMNFKQLQEF 120          
BLAST of FC928206 vs. ExPASy Swiss-Prot
Match: CYT1_MAIZE (Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.166e-18
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 3
Query:    3 VREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSS 278
            +++V A  N+ ++  LARFAV+EHN+K N+ L F            GT+Y +T+E  +G  KKL+EAKVWEKPW  FK+L+EF PV +  S+
Sbjct:   44 IKDVPANENDLQLQELARFAVNEHNQKANALLGFEKLVKAKTQVVAGTMYYLTIEVKDGEVKKLYEAKVWEKPWENFKQLQEFKPVEEGASA 135          
BLAST of FC928206 vs. ExPASy Swiss-Prot
Match: CYT1_HORVU (Cysteine proteinase inhibitor OS=Hordeum vulgare GN=ICY PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.549e-15
Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 3
Query:   27 NNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVA 263
            N+ E + LARFAV EHN K N+ L+F            G ++  T+E  EGG KKL+EAKVWEK W  FK+L+EF P A
Sbjct:   29 NDLETIELARFAVAEHNAKANALLEFEKLVKVRQQVVAGCMHYFTIEVKEGGAKKLYEAKVWEKAWENFKQLQEFKPAA 107          
BLAST of FC928206 vs. ExPASy Swiss-Prot
Match: CYT7_ARATH (Cysteine proteinase inhibitor 7 OS=Arabidopsis thaliana GN=CYS7 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.347e-15
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 3
Query:   33 QEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQS 269
            +EI ++A FAV EHN+++N+ L+             G LY +TLE +E G+KK++EAKVW KPWM FK+L+EF  +  S
Sbjct:   59 KEIDDIALFAVQEHNRRENAVLELARVLKATEQVVAGKLYRLTLEVIEAGEKKIYEAKVWVKPWMNFKQLQEFKNIIPS 137          
BLAST of FC928206 vs. ExPASy Swiss-Prot
Match: CYT1_ARATH (Cysteine proteinase inhibitor 1 OS=Arabidopsis thaliana GN=CYS1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.652e-14
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 3
Query:    3 VREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFN 254
            VR+++A AN+ ++ +LARFAVDEHNK +N  L++            GT++ +T+E  +G   K++EAKV EK W   K+L+ FN
Sbjct:   13 VRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTMHHLTVEVADGETNKVYEAKVLEKAWENLKQLESFN 96          
The following BLAST results are available for this feature:
BLAST of FC928206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CYTI_VIGUN6.263e-2256.82Cysteine proteinase inhibitor OS=Vigna unguiculata... [more]
CYT6_ARATH2.380e-2151.06Cysteine proteinase inhibitor 6 OS=Arabidopsis tha... [more]
CYT1_ORYSJ2.228e-1958.02Cysteine proteinase inhibitor 1 OS=Oryza sativa su... [more]
CYTA_HELAN4.201e-1860.00Cysteine proteinase inhibitor A OS=Helianthus annu... [more]
CYT12_ORYSJ4.201e-1847.25Cysteine proteinase inhibitor 12 OS=Oryza sativa s... [more]
CYT3_ARATH7.166e-1851.81Cysteine proteinase inhibitor 3 OS=Arabidopsis tha... [more]
CYT1_MAIZE7.166e-1845.65Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1[more]
CYT1_HORVU2.549e-1549.37Cysteine proteinase inhibitor OS=Hordeum vulgare G... [more]
CYT7_ARATH4.347e-1545.57Cysteine proteinase inhibitor 7 OS=Arabidopsis tha... [more]
CYT1_ARATH1.652e-1441.67Cysteine proteinase inhibitor 1 OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YJ08FM1 TF Citrus clementina cDNA clone KN0AAP12YJ08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928206 ID=FC928206; Name=FC928206; organism=Citrus clementina; type=EST; length=486bp
GTGTTCGTGAGGTTGAAGCAACAGCCAACAATCAGGAGATCGTTAATCTC
GCACGCTTCGCTGTGGATGAGCATAACAAGAAGCAGAATTCAAATCTGCA
ATTTGTAAAAGTTGTAAGTGCGAAGCAGCAAGTGGTTTCAGGGACTCTGT
ACGACATCACCTTGGAGGCTGTTGAAGGAGGTCAGAAGAAACTTTTTGAA
GCTAAGGTCTGGGAGAAGCCTTGGATGCAATTCAAGGAGTTGAAAGAATT
CAATCCTGTTGCTCAGTCTCACTCCTCAACCGCTTAGCTTGTGGTGACTG
AAGATGACATCTACGTGTAGCTTGCAATGGATCAAACAAAGAGACAGTAT
CAATAAGAATGGAGCTATAACCATGTTCAGAATATAAAAATAAATGTAAC
CGGATTTATGAGTTTGGTTCTTTAATCTTTTGCAAGTTATGTGTCGATTA
TTTATGGTAGTAGCTGCAACTCACCGCAACTTTTAT
back to top