FC928208

Overview
NameFC928208
Unique NameFC928208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11608 contig Ccv1_Contig11608:25..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928208 vs. ExPASy Swiss-Prot
Match: PUS6_ARATH (RNA pseudourine synthase 6, chloroplastic OS=Arabidopsis thaliana GN=At4g21770 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.443e-69
Identity = 138/231 (59.74%), Postives = 170/231 (73.59%), Query Frame = 1
Query:   34 SSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNVVLS-FSSSNRNFVCESWKRHVFTHXXXXXXXXXXXPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVL-EYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAG 720
            S   T   R+L APVSLLRTLAST  +    +++SN     F SS + F C S  +                 S+ GY EY+RL+PCP+ N PPR+EH+VV E   ++ E+I ++L+LPPL+VADLI FGAV+YALVCPKPP TATPE++ +F+EVT PSVL KRSSIKGKTVREAQKTFR+TH +Q  EAGTYLRVHVHPKR PRCY+IDWKSRI+AVT+S+V+LDKPAG
Sbjct:    3 SPALTGGYRNLTAPVSLLRTLASTRVTTP--LFRSNKHSPRFISSPKRFTCLSLLK-----TDSQNQTTLSSSSNSGYHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPPLYVADLIRFGAVHYALVCPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTFRVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAG 226          
BLAST of FC928208 vs. ExPASy Swiss-Prot
Match: PUS6_ORYSJ (RNA pseudourine synthase 6, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0660400 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.215e-60
Identity = 109/157 (69.43%), Postives = 131/157 (83.44%), Query Frame = 1
Query:  247 PSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESHVVLDKPA 717
            P++  YP Y RLLPCP Q+ PPR+EHLV  E    +++I R L LPPL+VADLI FGAVYYALV P+PP  A PE +R+F+EVT+PSVL +R SIKGKTVREAQKTFR+T  +Q +EAGTYLRVHVHPKRFPRCY+IDWKSR+IAVT+++VVLDKPA
Sbjct:   66 PATAAYPVYGRLLPCPLQDDPPRIEHLVAREDEVAVDFISRSLTLPPLYVADLIKFGAVYYALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDPNQRLEAGTYLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPA 222          
The following BLAST results are available for this feature:
BLAST of FC928208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PUS6_ARATH2.443e-6959.74RNA pseudourine synthase 6, chloroplastic OS=Arabi... [more]
PUS6_ORYSJ1.215e-6069.43RNA pseudourine synthase 6, chloroplastic OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YO10FM1 TF Citrus clementina cDNA clone KN0AAP9YO10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928208 ID=FC928208; Name=FC928208; organism=Citrus clementina; type=EST; length=720bp
CGGGATCCCGGGTAGATGAGCTCCGTGAGCTTCTCTTCGATCTTCACAAA
CAATGGCCGGAGTTTGGGTGCACCGGTATCCCTCCTGCGCACGTTAGCAT
CAACACACGCATCTTGTCATAGAAATATCTATAAGAGCAATGTTGTTTTA
TCTTTCTCTTCAAGTAACAGAAATTTTGTTTGCGAATCCTGGAAACGACA
TGTATTCACTCACACAGACACAACCGCTACTGCTGCTGCCGCAACTCCTT
CGTCTTATGGCTATCCTGAATATCATCGCTTGCTTCCATGCCCCTCACAG
AACTGTCCACCAAGAGTTGAACATTTAGTTGTTTCAGAAGGAGGGCCTGT
TCTAGAATATATCTGTAGAGAACTGAATCTTCCCCCTCTGTTTGTTGCAG
ATCTTATCCATTTTGGAGCTGTTTATTATGCCCTTGTATGTCCAAAACCT
CCTCTAACTGCAACTCCTGAGCAGATGAGGGTATTTAAAGAAGTTACGGA
TCCATCAGTTCTCAGTAAAAGATCTTCTATCAAAGGAAAGACAGTACGAG
AAGCACAAAAAACGTTTCGTATAACTCATGTGGACCAGATTGTTGAAGCC
GGAACATACTTGCGTGTGCATGTACACCCAAAGCGATTCCCAAGGTGCTA
TGACATTGACTGGAAATCGAGAATCATAGCAGTGACTGAATCCCATGTGG
TTTTGGACAAACCGGCTGGG
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