FC928212

Overview
NameFC928212
Unique NameFC928212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1548 contig Ccv1_Contig1548:3..604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.652e-59
Identity = 109/176 (61.93%), Postives = 138/176 (78.41%), Query Frame = 1
Query:   73 EQRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLACQW 600
            E RWSLKG TALVTGG+KGIGYA+VEELA  GA V+TCSRNE EL++ ++ W+ KGL V GSVCDL  R +R+KLM TV+  FDGKLNIL+NNAG  I K            +M TNFE+AYHLSQ+A+PLLK++ NGN+IF+SS+AG  A+P  S+Y++SKGA+NQ+TK+LAC+W
Sbjct:   14 EGRWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEW 189          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: TRNH_DATST (Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 6.230e-59
Identity = 107/176 (60.80%), Postives = 144/176 (81.82%), Query Frame = 1
Query:   73 EQRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLACQW 600
            ++RWSL+GMTALVTGGT+GIGYA+VEELA FGA V+TCSR++ +L++ +++W+ KG +VSG VCD+   +QR+ LM +V+S F+GKLNILINNAGT IPK            +M TNFE++Y+L QLAHPLLK++GN +I+F SS AGVIA+P+ SIYA+SKGA+NQ+TK+LAC+W
Sbjct:   10 DRRWSLRGMTALVTGGTRGIGYAIVEELANFGAEVYTCSRSQNDLDECLEKWRRKGFKVSGPVCDVSSISQRQTLMESVTSSFNGKLNILINNAGTTIPKEATNFTAEDYSIIMGTNFEASYNLCQLAHPLLKASGNASIVFNSSAAGVIAVPLSSIYAASKGAINQVTKSLACEW 185          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.367e-58
Identity = 107/177 (60.45%), Postives = 136/177 (76.84%), Query Frame = 1
Query:   70 REQRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLACQW 600
            + QRWSLK  T LVTGGTKGIG+A+VEE A FGA++HTC+RNE ELN+ + +W+ KG QV+GSVCD  +R +REKLM TVSS F GKL+ILINN G    K             ++TN ESAYHLSQLAHPLLK++G GNIIF+SS+AGV++  + SIY+++KGA+NQL +NLAC+W
Sbjct:    6 QSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEW 182          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.941e-52
Identity = 96/174 (55.17%), Postives = 132/174 (75.86%), Query Frame = 1
Query:   79 RWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLACQW 600
            RW+L+G TALVTGG++GIGY +VEELA+ GA V+TCSRN+ ELN  + +W+SKG +V  SVCDL  R++R++LM TV++ F GKLNIL+NNAG  I K            +M+ NFE+AYHLS LAHP LK++  GN++FISSV+G +A+P  ++Y ++KGAM+QLT+ LA +W
Sbjct:    4 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEW 177          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.803e-51
Identity = 95/174 (54.60%), Postives = 129/174 (74.14%), Query Frame = 1
Query:   79 RWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLACQW 600
            RW+L+G TALVTGG++GIGY +VEELA  GA V+TCSRN+ EL++ + +W+SKG  V  SVCDL  R++RE+ M TVS+ F GKLNIL+NNAG  I K            +M+ NFE+AYHLS LAHP LK++  GN++FISS++G  A+P  ++Y ++KGAM+QLT+ LA +W
Sbjct:    4 RWNLEGCTALVTGGSRGIGYGIVEELANLGASVYTCSRNQKELDECLTQWRSKGFNVEASVCDLSSRSEREEFMKTVSNHFHGKLNILVNNAGIVIYKEAKDYTMEDYSHIMSINFEAAYHLSVLAHPFLKASERGNVVFISSISGASALPYEAVYGATKGAMDQLTRCLAFEW 177          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: DHRS4_BOVIN (Dehydrogenase/reductase SDR family member 4 OS=Bos taurus GN=DHRS4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.227e-15
Identity = 55/175 (31.43%), Postives = 87/175 (49.71%), Query Frame = 1
Query:   76 QRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTF-IPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLACQ 597
            +R  L    ALVT  T GIG+A+   LA  GA V   SR +  +++ +   K +GL V+G+VC +     RE+L+ T + +  G ++ILI+NA                   ++  N ++   L++   P +   G G+I+ +SS+A     P    Y  SK A+  LTKNLA +
Sbjct:    8 RRNPLDNKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTVCHVGKAEDRERLVAT-AVKLHGGVDILISNAAVSPFFGSLMDVPEEVWDKILDVNVKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGPYNVSKTALLGLTKNLALE 181          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: DHK1_STRVN (Granaticin polyketide synthase putative ketoacyl reductase 1 OS=Streptomyces violaceoruber GN=gra-orf5 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.521e-15
Identity = 56/170 (32.94%), Postives = 84/170 (49.41%), Query Frame = 1
Query:  103 ALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAG-----NGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLACQ 597
            ALVTG T GIG A+   LAA GA    C+R+E  L Q ++E + +G  V G+VCD+   AQ    +     ++ G ++IL+NNAG                 V+TTN  S + +++    +L + G      G II I+S  G   +     Y++SK  +  LTK L  +
Sbjct:   20 ALVTGATSGIGLAIARRLAALGARTFLCARDEERLAQTVKELRGEGFDVDGTVCDVADPAQIRAYVAAAVQRY-GTVDILVNNAGRSGGGATAEIADELWLDVITTNLTSVFLMTK---EVLNAGGMLAKKRGRIINIASTGGKQGVVHAVPYSASKHGVVGLTKALGLE 185          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: GNO_GLUOX (Gluconate 5-dehydrogenase OS=Gluconobacter oxydans GN=gno PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.606e-14
Identity = 53/173 (30.64%), Postives = 85/173 (49.13%), Query Frame = 1
Query:   82 WSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLACQW 600
            +SL G  ALVTG ++GIG  + + LA +GA V    RN   L+     ++++GL+ S +V D+  +      +  +     G ++ILINNAG                 +M+TN  + + + Q     +   G G I+ I SV   +A P  + Y ++KGA+  LTK +A  W
Sbjct:    7 FSLSGARALVTGASRGIGLTLAKGLARYGAEVVLNGRNAESLDSAQSGFEAEGLKASTAVFDVTDQDAVIDGVAAIERDM-GPIDILINNAGIQRRAPLEEFSRKDWDDLMSTNVNAVFFVGQAVARHMIPRGRGKIVNICSVQSELARPGIAPYTATKGAVKNLTKGMATDW 178          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: DHRS4_MOUSE (Dehydrogenase/reductase SDR family member 4 OS=Mus musculus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14
Identity = 54/176 (30.68%), Postives = 85/176 (48.30%), Query Frame = 1
Query:   76 QRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGT--FIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLACQ 597
            +R  L    ALVT  T GIG+A+   LA  GA V   SR +  +++ +   + +GL V+G VC +     REKL+ T   +  G ++IL++NA    F               V++ N  +   + +   P ++  G G+++ + SVAG    P    Y  SK A+  LTKN A +
Sbjct:    8 RRNPLSNKVALVTASTDGIGFAIARRLAEDGAHVVVSSRKQQNVDRAVATLQGEGLSVTGIVCHVGKAEDREKLITTALKRHRG-IDILVSNAAVNPFFGN-LMDVTEEVWDKVLSINVTATAMMIKAVVPEMEKRGGGSVVIVGSVAGFTRFPSLGPYNVSKTALLGLTKNFAAE 181          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: SOU1_SCHPO (Sorbose reductase sou1 OS=Schizosaccharomyces pombe GN=sou1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.674e-14
Identity = 53/177 (29.94%), Postives = 87/177 (49.15%), Query Frame = 1
Query:   82 WSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTC-SRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPK-XXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIA--IPMCSIYASSKGAMNQLTKNLACQW 600
            +SLKG T L+TGG+ GIG+++ +  AA G+ V     RN+  L    +     G+Q     C ++ R+   +       +  G+L+++I NAG  IP              V+  N   AY+ +Q A    K  G G++IF +S++G IA      + Y ++K A+  L + LA +W
Sbjct:    5 FSLKGKTTLITGGSGGIGFSIAKAFAAAGSNVGLLYGRNKKALEYAAELRDKHGVQAKAYSCPIENRSAVIETTNQAVEELGGRLDVMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLIFTASMSGHIANWPQQWASYHATKAAVKHLARALAVEW 181          
The following BLAST results are available for this feature:
BLAST of FC928212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
TRN1_DATST3.652e-5961.93Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
TRNH_DATST6.230e-5960.80Tropinone reductase homolog OS=Datura stramonium P... [more]
TRNH1_ARATH2.367e-5860.45Tropinone reductase homolog At1g07440 OS=Arabidops... [more]
TRN2_DATST1.941e-5255.17Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]
TRN2_HYONI2.803e-5154.60Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
DHRS4_BOVIN4.227e-1531.43Dehydrogenase/reductase SDR family member 4 OS=Bos... [more]
DHK1_STRVN5.521e-1532.94Granaticin polyketide synthase putative ketoacyl r... [more]
GNO_GLUOX1.606e-1430.64Gluconate 5-dehydrogenase OS=Gluconobacter oxydans... [more]
DHRS4_MOUSE2.098e-1430.68Dehydrogenase/reductase SDR family member 4 OS=Mus... [more]
SOU1_SCHPO4.674e-1429.94Sorbose reductase sou1 OS=Schizosaccharomyces pomb... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ11FM1 TF Citrus clementina cDNA clone KN0AAP12YJ11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928212 ID=FC928212; Name=FC928212; organism=Citrus clementina; type=EST; length=602bp
ATTTTAGATAAGATAGGAATAGTTGCTTTTCCTCCTATTAATCAATAGGA
AAAAAACATGTCAGATTTTAGAGAGCAAAGATGGTCTCTGAAGGGTATGA
CCGCCCTTGTCACAGGCGGAACCAAAGGCATCGGATATGCAGTAGTAGAA
GAACTAGCAGCATTTGGAGCAATAGTTCATACATGTTCCCGTAACGAAAC
AGAGCTTAATCAAAGAATTCAAGAATGGAAGAGTAAGGGGCTTCAAGTGA
GTGGCTCTGTATGTGACCTGAAAATTAGAGCTCAGCGAGAGAAGCTGATG
TTGACTGTCTCGTCTCAGTTTGATGGCAAGCTCAACATCCTTATTAACAA
TGCTGGAACCTTCATACCTAAGGAAACCACAGAATTTACCGAGGAGGATT
TCTCAACTGTAATGACTACCAATTTTGAGTCTGCTTATCATCTGTCTCAA
CTTGCACACCCCCTCTTAAAATCAGCAGGAAATGGAAACATCATATTTAT
ATCCTCTGTTGCAGGCGTTATTGCTATACCTATGTGTTCCATCTATGCAT
CGAGTAAAGGGGCGATGAATCAACTCACAAAGAACTTGGCATGCCAGTGG
GC
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