FC928213

Overview
NameFC928213
Unique NameFC928213
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14262 contig Ccv1_Contig14262:11..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928213 vs. ExPASy Swiss-Prot
Match: TM147_RAT (Transmembrane protein 147 OS=Rattus norvegicus GN=Tmem147 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.161e-23
Identity = 56/154 (36.36%), Postives = 85/154 (55.19%), Query Frame = 3
Query:  111 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSENDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 572
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PLWVGARG+EF W Y+   +++N +LV  I  +A
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASA 151          
BLAST of FC928213 vs. ExPASy Swiss-Prot
Match: TM147_MOUSE (Transmembrane protein 147 OS=Mus musculus GN=Tmem147 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.161e-23
Identity = 56/154 (36.36%), Postives = 85/154 (55.19%), Query Frame = 3
Query:  111 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSENDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 572
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PLWVGARG+EF W Y+   +++N +LV  I  +A
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASA 151          
BLAST of FC928213 vs. ExPASy Swiss-Prot
Match: TM147_HUMAN (Transmembrane protein 147 OS=Homo sapiens GN=TMEM147 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.161e-23
Identity = 56/154 (36.36%), Postives = 85/154 (55.19%), Query Frame = 3
Query:  111 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSENDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 572
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PLWVGARG+EF W Y+   +++N +LV  I  +A
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASA 151          
BLAST of FC928213 vs. ExPASy Swiss-Prot
Match: TM147_BOVIN (Transmembrane protein 147 OS=Bos taurus GN=TMEM147 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.161e-23
Identity = 56/154 (36.36%), Postives = 85/154 (55.19%), Query Frame = 3
Query:  111 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSENDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 572
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PLWVGARG+EF W Y+   +++N +LV  I  +A
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASA 151          
BLAST of FC928213 vs. ExPASy Swiss-Prot
Match: TM147_XENTR (Transmembrane protein 147 OS=Xenopus tropicalis GN=tmem147 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.287e-23
Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = 3
Query:  111 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSEN--DNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 572
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+ V+ R  PLWVGARG+EF W Y+   +++N +LV  +++AA
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWRCVQAGATYLCVQLCKMLFLATFFPTWEGAVGAYDFIGEFMKATVDLADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAELVMSRCLPLWVGARGIEFDWKYIQMSIDSNISLVHYMAVAA 153          
BLAST of FC928213 vs. ExPASy Swiss-Prot
Match: TM147_XENLA (Transmembrane protein 147 OS=Xenopus laevis GN=tmem147 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.287e-23
Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = 3
Query:  111 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSEN--DNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 572
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+ V+ R  PLWVGARG+EF W Y+   +++N +LV  +++AA
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWRCVQAGATYLCVQLCKMLFLATFFPTWEGAAGAYDFIGEFMKATVDLADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAELVMSRCLPLWVGARGIEFDWKYIQMSIDSNISLVHYMAVAA 153          
BLAST of FC928213 vs. ExPASy Swiss-Prot
Match: TM147_DANRE (Transmembrane protein 147 OS=Danio rerio GN=tmem147 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.287e-23
Identity = 56/156 (35.90%), Postives = 86/156 (55.13%), Query Frame = 3
Query:  111 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSENDN--FDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 572
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+ ++ R  PLWVGARG+EF W Y+    ++N +LV  I++AA
Sbjct:    1 MTLFHFGNCFSLAYFPYFITYKCSGLSEYNAFWRCVQAGATYLFVRLCKMLFLATFFPTWEGGAGVYDFVGEFMKATVDMADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAELIMSRCIPLWVGARGIEFDWKYIQMSFDSNISLVHYIAMAA 153          
The following BLAST results are available for this feature:
BLAST of FC928213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM147_RAT2.161e-2336.36Transmembrane protein 147 OS=Rattus norvegicus GN=... [more]
TM147_MOUSE2.161e-2336.36Transmembrane protein 147 OS=Mus musculus GN=Tmem1... [more]
TM147_HUMAN2.161e-2336.36Transmembrane protein 147 OS=Homo sapiens GN=TMEM1... [more]
TM147_BOVIN2.161e-2336.36Transmembrane protein 147 OS=Bos taurus GN=TMEM147... [more]
TM147_XENTR6.287e-2335.90Transmembrane protein 147 OS=Xenopus tropicalis GN... [more]
TM147_XENLA6.287e-2335.90Transmembrane protein 147 OS=Xenopus laevis GN=tme... [more]
TM147_DANRE6.287e-2335.90Transmembrane protein 147 OS=Danio rerio GN=tmem14... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YO13FM1 TF Citrus clementina cDNA clone KN0AAP9YO13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928213 ID=FC928213; Name=FC928213; organism=Citrus clementina; type=EST; length=646bp
ATAAAAATACTTTTAAGGGACTGACTTGCGAGCTTGAACTCTCTCGCTTC
CTACTTGTTGTTGGATCACCACAGCGGTTTCCGTGGCGGAGAGAGGAAGG
TTAGGTAAAGATGACGGTTTTTCATTTCTTCAACTGTGCGATTCTGACTT
TCGGCCCTCACGCAGTCTACTACTCCGCCACGCCCTTATCCGAGTATGAT
ACACTTGGTACCTCTGTGAAAGCGGCTCTCGTTTATCTCGGCACAGCTCT
TGTTAAGCTTGTTTGCTTAGCGACGTTTCTTAAGGTATCGGAGAATGATA
ACTTCGATCCATATCAGGAACTGTTGAAAGCATTGATCGGTTTTATAGAT
GTTGCTGGGCTTTACTTTGCCTTAACCCAGTTGACTCACAGGAACATTTC
TCAGAATCATAAATTTCAAGCTGTTGGACTGGGGTGGGCTTTTGCTGATT
CTGTTCTACATAGATTGGCTCCACTTTGGGTGGGTGCTAGAGGACTAGAG
TTTACTTGGGACTACCTTCTTCAAGGGCTAGAAGCTAATGCAAATTTGGT
GTTGAGTATTTCCCTTGCTGCATTTGGGATCTTTGATGTGGCTTCGCAAA
AACAAACCGAAAGACCGTTGATTCCCATAATATATGCATGTGCCGG
back to top