FC928218

Overview
NameFC928218
Unique NameFC928218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1550 contig Ccv1_Contig1550:17..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928218 vs. ExPASy Swiss-Prot
Match: SPA3_ARATH (Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.157e-49
Identity = 115/229 (50.22%), Postives = 157/229 (68.56%), Query Frame = 3
Query:    3 DIEEVSKQQAILRKKGGLGSFAELANDD---LSGLNIPSLNIIDNDCSATMGSRKRFRPE-LQLHHLEECDDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKP--SGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGY--SEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSHLVCSLSFDRDGELFAAAGVNKKIKVFECDA 665
            DIE+V K+Q IL+K+G   S ++ + DD    SG  + S    + + SA + SRKR R   L L +  E D+            ++  +L +SSRLM+NFKKLES YFLTR R +K   SG+ L RHS LSS+      +V+E+SS++N  + + +  ++ R+ GWI+PFLEGLC+YLSFS+LRVKADL QGDLLNSS+LVC+L+FDR+GELFA AGVNKKIK+FEC++
Sbjct:  351 DIEQVVKRQLILKKRGS--SLSDFSKDDHQYTSGQPLMSFQA-NEEPSAFLASRKRVRQGILALENGVEVDEE-----------SQGSTLLESSRLMRNFKKLESVYFLTRRRQMKAAASGKSLTRHSPLSSENGRGSMIVSEKSSVSNPVAPKAFFNNDSRQGGWIDPFLEGLCRYLSFSQLRVKADLKQGDLLNSSNLVCALAFDREGELFATAGVNKKIKIFECNS 565          
BLAST of FC928218 vs. ExPASy Swiss-Prot
Match: SPA4_ARATH (Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.717e-45
Identity = 106/225 (47.11%), Postives = 143/225 (63.56%), Query Frame = 3
Query:    3 DIEEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRPELQLHHLEECDDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKPSG---RPLVRH-SQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSHLVCSLSFDRDGELFAAAGVNKKIKVFECDA 665
            DI++V K+Q +L++KG                          D  + + SRKR R   +    EE +D+   +++  L    E +L +SSRLM+N KKLES YF TR R +K +    +PL R+ S LS +GR+S     E+SS++   SK+  ++ R+ GWI+PFLEGLCKYLSFSKLRVKADL QGDLLNSS+LVC++ FDRDGE FA AGVNKKIK+FEC++
Sbjct:  322 DIDQVVKRQLVLQQKG-------------------------RDVRSFLASRKRIRQGAETTAAEEENDDNSIDEESKLDDTLESTLLESSRLMRNLKKLESVYFATRYRQIKAATAAEKPLARYYSALSCNGRSS-----EKSSMSQ-PSKDPINDSRQGGWIDPFLEGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECES 515          
BLAST of FC928218 vs. ExPASy Swiss-Prot
Match: SPA1_ARATH (Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 52/134 (38.81%), Postives = 79/134 (58.96%), Query Frame = 3
Query:  267 SSRLMKNFKKLESAYFLTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVN-ERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSHLVCSLSFDRDGELFAAAGVNKKIKVFECDA 665
            + RLM N ++LE AYF  R +         +  S  ++  R+ K L + +R S N   +++  ++G+ S  +  F EGLCK+  +SK      +  GDLLNS+ +VCSLSFD D E  AAAG++KKIK+F+ +A
Sbjct:  623 TDRLMSNIRQLEDAYFFMRSQ---------INLSSSAATARSDKTLKDRDRCSENQNENQDMSTKGKSSDQLEVFFEGLCKFARYSKFETCGTIRSGDLLNSASVVCSLSFDPDEEHIAAAGISKKIKIFDFNA 747          
BLAST of FC928218 vs. ExPASy Swiss-Prot
Match: SPA2_ARATH (Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 3
Query:  273 RLMKNFKKLESAYFLTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSHLVCSLSFDRDGELFAAAGVNKKIKVFE 656
            RL++N  +LESAYF  R     P  R  +R  +          L N  +++  + + E +S   R G    F +GLCKY  +SK   +  L   +L N+S+++CSL FDRD + FA AGV+KKIK++E
Sbjct:  635 RLIRNINQLESAYFAARIDAHLPEARYRLRPDR--------DLLRNSDNTVAEVENSETWSSDDRVG---AFFDGLCKYARYSKFETRGVLRTSELNNTSNVICSLGFDRDEDYFATAGVSKKIKIYE 751          
BLAST of FC928218 vs. ExPASy Swiss-Prot
Match: COP1_PEA (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 63/223 (28.25%), Postives = 104/223 (46.64%), Query Frame = 3
Query:    9 EEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRPELQLH-HLEECDDNL--DDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPV-KPSGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSHLVCSLSFDRDGELFAAAGVNKKIKVFECDA 665
            +  S +  +L   GG  S     + + SGL    LN+     S +   +   + ++  H H  +  D +   D+Q  N +G    +L +  R+   F  L+  Y   R +   KP G+                    ER +  N  S+EGYS G     ++ F   L  +  +S+LRV A++  GD+ +S+++V S+ FDRD +LFA AGV+++IKVF+  A
Sbjct:  206 DRYSVKLRMLDDSGGRKSRHSSMDLNSSGLASSPLNLRGGLSSGSHTKKNDGKSQISSHGHGIQRRDPITGSDSQYINQSG---LALVRKKRVHTQFNDLQECYLQKRRQAADKPHGQ-------------------QERDT--NFISREGYSCG-----LDDFQSVLTTFTRYSRLRVIAEIRHGDIFHSANIVSSIEFDRDDDLFATAGVSRRIKVFDFSA 399          
BLAST of FC928218 vs. ExPASy Swiss-Prot
Match: COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11
Identity = 47/146 (32.19%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  222 QKHNLTGNEERSLFKSSRLMKNFKKLESAYF-LTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSHLVCSLSFDRDGELFAAAGVNKKIKVFE 656
            +K  L+G++ +SL +S+  M   K++ + +  L  C         L +  QL+    + +   N++S +     +EGYS G     +  F   L  +  +S+LRV A++  GD+ +S+++V S+ FDRD ELFA AGV++ IKVF+
Sbjct:  273 KKDALSGSDSQSLNQSTVSMARKKRIHAQFNDLQECY--------LQKRRQLADQPNSKQE--NDKSVVR----REGYSNG-----LADFQSVLTTFTRYSRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFD 399          
The following BLAST results are available for this feature:
BLAST of FC928218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SPA3_ARATH3.157e-4950.22Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=... [more]
SPA4_ARATH4.717e-4547.11Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=... [more]
SPA1_ARATH2.207e-1838.81Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis th... [more]
SPA2_ARATH1.025e-1537.50Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=... [more]
COP1_PEA4.457e-1128.25E3 ubiquitin-protein ligase COP1 OS=Pisum sativum ... [more]
COP1_ARATH5.820e-1132.19E3 ubiquitin-protein ligase COP1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ13FM1 TF Citrus clementina cDNA clone KN0AAP12YJ13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928218 ID=FC928218; Name=FC928218; organism=Citrus clementina; type=EST; length=665bp
CAGATATTGAAGAAGTATCAAAGCAGCAAGCAATTCTTAGGAAAAAAGGA
GGCTTAGGTTCATTTGCAGAGTTGGCGAATGATGATCTCTCTGGTTTAAA
CATCCCTTCTTTAAATATTATTGATAACGATTGTTCTGCTACCATGGGTT
CGAGAAAACGATTTAGACCGGAACTTCAGCTCCATCACTTAGAGGAATGT
GATGATAATCTTGATGACAATCAGAAACACAACCTCACTGGAAATGAAGA
AAGAAGTCTTTTTAAAAGCTCTCGATTGATGAAGAACTTCAAAAAGTTGG
AGTCAGCATATTTTTTGACAAGATGTAGACCAGTCAAGCCATCAGGGAGA
CCACTGGTTAGACATTCTCAATTAAGTAGTGATGGTAGAACATCTAAACC
ACTTGTAAATGAAAGAAGTTCCATAAACAATTTAGGATCAAAAGAGGGGT
ATAGTGAAGGTCGAAGAAGTGGATGGATAAATCCATTTCTTGAGGGTTTG
TGCAAGTATCTGTCTTTCAGTAAGTTGAGGGTCAAGGCAGACCTGAACCA
AGGAGATTTATTAAACTCTTCCCACCTAGTATGCTCTCTCAGCTTTGATC
GTGATGGAGAATTATTTGCTGCCGCTGGTGTAAATAAGAAGATTAAAGTA
TTTGAATGTGATGCC
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